GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002311-TA|BGIBMGA002311-PA|IPR001424|Superoxide
dismutase, copper/zinc binding, IPR008388|ATPase, V1 complex, subunit
S1
         (1471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...    36   0.056
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    31   0.91 
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    29   4.8  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    29   4.8  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    28   8.4  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    28   8.4  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    28   8.4  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 35.5 bits (78), Expect = 0.056
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 747 TADQYELGDLGLKYGLIDEAKSFKSFYNETQVSLFGPYSILGRSVVLHKKSRD 799
           TA    +GDLG      D   + K+ ++++ +SLFG  SI+GR++V+H    D
Sbjct: 76  TAAVRHVGDLGNLES--DAQGNIKTTFSDSVISLFGANSIIGRTIVIHAGEDD 126


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 4/106 (3%)

Query: 583 LEGLCRIGDFTTRHGMLSIAGKKVDSDRLTRRLFTDTVISLTGKHSIMRKSLLIYDDHGP 642
           + G+  IG   TR G  SIAG   D  +   R++      +  +++I+   L  + +  P
Sbjct: 482 ITGVGSIGSSATRRGRKSIAGSLSDISKSFGRMYVGRYPDVESQNAIL-LLLGCFPNQSP 540

Query: 643 VARGERMACSIVNGLHRRKA---VVRDWFGNGQQLQLKGKIEMTQQ 685
           V   E ++  I   L +R++   V RD+          GK+  T +
Sbjct: 541 VLISESVSSYIQGVLRQRRSEYRVERDFSIFSSTFNANGKVPSTDE 586


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe|chr
            mitochondrial|||Manual
          Length = 537

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 1344 WWTAVGVEVIFGSLETSGLNLKAPAPPDAPSAVLGRSY 1381
            W   +GV ++FG     GLN      PD P A +G ++
Sbjct: 421  WILFIGVNIVFGPQHFLGLNGMPRRIPDYPEAFVGWNF 458


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 8/126 (6%)

Query: 574 HPEQYCRRGLEGLCRIGDFT-TRHGMLS-IAGKKV-DSDRLTRRLFTDTVISLTGKHSIM 630
           H    C   LE LC +G      +G+L+  AG+   D +  T   +T   +S   +   +
Sbjct: 54  HDNLGCPHTLEHLCFMGSKKYPMNGILTKFAGRACGDINACTDVDYTSYELSAAEEDGFL 113

Query: 631 RKSLLIYDDH--GPVARGERMACSI--VNGLHRRKAVVRDWFGNGQQLQLKGKIEMTQQS 686
           R  L ++ DH   P+   E     +  +NG+     VV     N Q  +     +  + S
Sbjct: 114 RL-LPVFADHILSPILSDEAFCTEVYHINGMGEESGVVYSEMQNTQSSETDVMFDCMRTS 172

Query: 687 EYDVTN 692
           +Y VT+
Sbjct: 173 QYPVTS 178


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 599

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 1184 NETQMLTLQGPWSERDAQMTETFARLQDIYGAGRVLGILGNSVSQSQSPDYVEGEWSRVR 1243
            NET++  + GP  +  +  T   AR         V   +  SV+   S  ++    SR +
Sbjct: 87   NETELANISGPHKKSTSTSTRKRARSSKKKATDSVSDKIDESVASYDSSTHLRRS-SRSK 145

Query: 1244 RQTGNETTTPSGQEEEKMTKAVPK 1267
            +   N  ++   + EE+++KA  K
Sbjct: 146  KPV-NYNSSSESESEEQISKATKK 168


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 278 EMTRRSLYVVIFDNRHVDSFLACAKLRLIPPKSSKVLINMDGIRGTVDFTQRSPFDPTWV 337
           E  RRS+Y +I D   ++   A  ++   P +        +GIR  +D+ Q   FD  W+
Sbjct: 30  EWKRRSIYQIITDRFSLEEG-ATERIPCDPVRFMYCGGTWNGIRNHLDYIQGMGFDAIWI 88

Query: 338 N 338
           +
Sbjct: 89  S 89


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 502 VIFRQPLDQPWEDTTIIIESMVHADGANVNNTREHRWAIHEHPPGVDYYNWTG--RCLSA 559
           ++ ++P D P      II+S    D     N   HR    +    +   + TG  +C+ +
Sbjct: 117 IVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNGWVHRMRTQKGIIFIILRDGTGFLQCVLS 176

Query: 560 GKVYEPHSLDIDTRHPE 576
           GKVY+  S D     PE
Sbjct: 177 GKVYDRASYDFINLGPE 193


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.137    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,072,016
Number of Sequences: 5004
Number of extensions: 320552
Number of successful extensions: 691
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 686
Number of HSP's gapped (non-prelim): 10
length of query: 1471
length of database: 2,362,478
effective HSP length: 82
effective length of query: 1389
effective length of database: 1,952,150
effective search space: 2711536350
effective search space used: 2711536350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)