Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002311-TA|BGIBMGA002311-PA|IPR001424|Superoxide
dismutase, copper/zinc binding, IPR008388|ATPase, V1 complex, subunit
S1
(1471 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 40 0.020
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 36 0.24
11_01_0146 + 1224143-1224409,1224760-1224888,1225759-1225815,122... 33 2.3
10_08_0074 - 14668625-14669797 32 3.0
07_01_0546 - 4024282-4024291,4024486-4024550,4024739-4024904,402... 32 4.0
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 31 5.2
04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814 31 6.9
01_05_0752 - 24909954-24910502,24914620-24914786,24914916-249149... 31 6.9
05_03_0644 + 16527364-16527961,16528048-16528622,16528710-16528877 31 9.2
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 39.5 bits (88), Expect = 0.020
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 749 DQYELGDLGLKYGLIDEAKSFKSFYNETQVSLFGPYSILGRSVVLHKKSRD 799
D+ +GDLG D F + Q+SL GP+SILGR+VV+H S D
Sbjct: 86 DERHVGDLGNIVANKDGVADI--FIKDLQISLSGPHSILGRAVVVHADSDD 134
Score = 32.3 bits (70), Expect = 3.0
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 618 DTVISLTGKHSIMRKSLLIYDDHGPVARGERMAC 651
D ISL+G HSI+ ++++++ D + RG++ C
Sbjct: 110 DLQISLSGPHSILGRAVVVHADSDDLGRGQKSNC 143
>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 35.9 bits (79), Expect = 0.24
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 1344 WWTAVGVEVIFGSLETSGLNLKAPAPPDAPSAVLGRSYHCSQPLVYTSDEAILRLPDVQM 1403
WW+ + ++ G + L KAPAPP AP AV S+ + + +D+ + P V
Sbjct: 539 WWSEA-MNIVRG---VADLLRKAPAPPPAPPAVPSSSFGVREGSFHGADQDVAPSPRV-- 592
Query: 1404 QIFMDSTE 1411
+F DSTE
Sbjct: 593 -VFSDSTE 599
>11_01_0146 +
1224143-1224409,1224760-1224888,1225759-1225815,
1225903-1226201,1226474-1226565,1226946-1227160,
1227205-1227228,1227314-1227497,1227612-1227742
Length = 465
Score = 32.7 bits (71), Expect = 2.3
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 10/128 (7%)
Query: 228 VFDPENNGEGMSVGDLDSRLGLIKVATD----AKVKKVRTLYKNDVIDILKNDMEMTRRS 283
+ D + G + V D ++ L+K+ D AKV + Y + K+ M + R+
Sbjct: 56 ILDAGSTGTRVHVFRFDKKIDLLKIGDDIEVFAKVDPGLSSYAGRPQEAAKSIMPLLDRA 115
Query: 284 LYVVI--FDNRHVDSFLACAKLRLI-PPKSSKVLINMDGIRGTVDFTQRSPFDPTWVNFQ 340
+ V N+ A A LRLI K++++L + +R V + ++P W+N
Sbjct: 116 NHAVPTWLMNKTPLELGATAGLRLIGDDKANQIL---EAVRDVVHTKTKFQYNPNWINVL 172
Query: 341 LGASDMEY 348
G+ + Y
Sbjct: 173 SGSQEGSY 180
>10_08_0074 - 14668625-14669797
Length = 390
Score = 32.3 bits (70), Expect = 3.0
Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 12/160 (7%)
Query: 126 SIVLETAERDRIICASILS-TEKLYETHALAKFTAPVAGTLHFR--WISAKEIDESDSYI 182
+IV +TA + + S T ++ T + K A G +R + +E YI
Sbjct: 28 AIVADTASGYHLFKINDYSRTRDIFPTGSALKSRAFTIGGHQWRIHYYPNGNTEECGEYI 87
Query: 183 QADLYHAKAVTDKSEYTEHKWKLFVTDIFDSDKGNYEDNCNVLQAVFDPENNGEGMSVGD 242
L+ + VTDK+ Y +H ++LF D F D N +D+ ++ D G+ + G
Sbjct: 88 SLFLHLDEIVTDKNVYAQHGFRLF--DEFAGD--NDDDDELQPSSIAD---LGQVSTFGG 140
Query: 243 LDSRLGLIKVATDAKVKKVRTLYKNDVIDILKNDMEMTRR 282
+ LG ++ +++K + L KND + + D+ +T+R
Sbjct: 141 NNIGLGRLRFIKREELEKSKYL-KNDSFTV-RCDVVVTKR 178
>07_01_0546 -
4024282-4024291,4024486-4024550,4024739-4024904,
4025012-4025160,4025332-4025440,4025532-4025725,
4025839-4025974,4026123-4026623,4026709-4026813,
4027023-4027113,4027325-4027411,4028038-4028128,
4028307-4028336
Length = 577
Score = 31.9 bits (69), Expect = 4.0
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 341 LGASDMEYESNLRFVGSMLQYNIRELPPKLLDANQVNYMCNTT 383
LG +++ NLR++GS + NI E + + Y CNTT
Sbjct: 246 LGGRPSDFDGNLRWLGSPDEENIDEELSNAAQCSPLPYSCNTT 288
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 31.5 bits (68), Expect = 5.2
Identities = 17/81 (20%), Positives = 29/81 (35%)
Query: 733 FHVDKSLSPPPAQGTADQYELGDLGLKYGLIDEAKSFKSFYNETQVSLFGPYSILGRSVV 792
F+ +S PPP+ G A + + + YG D + +Y V +
Sbjct: 151 FYYARSRPPPPSVGVAQRAPVSTERVYYGSFDPTSGYPQYYANGGVPATAAPQRMAAPAP 210
Query: 793 LHKKSRDRRWACSSIERGYSP 813
R+ WA ++ Y P
Sbjct: 211 PRSPPRESSWAFLNVFANYEP 231
>04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814
Length = 775
Score = 31.1 bits (67), Expect = 6.9
Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 623 LTGKHSIMRKSLLIYDDHGPVARGERMACSIVNGLHRRKAVVRDWFGNGQQLQLKGKIEM 682
+ G+ ++++ + DHG + E M + G V+ ++ NG+Q+QL +
Sbjct: 554 MNGEEMLLKRCADEHTDHGHLVETEEMLLN--QGQSTSVQVLENYNMNGEQVQLNHDADE 611
Query: 683 TQQSEYDVTNVQVTIEGLQNVNDYKIH 709
+ + N Q+ + + V+D H
Sbjct: 612 HSGDDRPIKNEQMLLNHVMGVHDLDNH 638
>01_05_0752 - 24909954-24910502,24914620-24914786,24914916-24914979,
24915472-24915597,24915673-24915943,24916032-24916287,
24916386-24916754,24916850-24916891,24917474-24917682,
24918074-24918109,24918509-24918918,24919314-24919438,
24920267-24920333,24921596-24921652
Length = 915
Score = 31.1 bits (67), Expect = 6.9
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 1001 KFVLGQFLEDIRKVMGVPEWMVSVDSRRTRDLHHSTCIQILLHFTGPHANRLELDFTRLL 1060
K +F+ED + MG+P+ +S R LH ++ + + P N + D + L
Sbjct: 387 KGAAARFMEDWAEQMGLPKQSAHANSDDLRSLHKTSVLPRRVSTIIPEPNEITDDLIQ-L 445
Query: 1061 ASGRLDSPSIFIPGYVDTKRKRGTQ 1085
AS S + G T+R R TQ
Sbjct: 446 ASSYEASGGRRLAGSSITRRIRSTQ 470
>05_03_0644 + 16527364-16527961,16528048-16528622,16528710-16528877
Length = 446
Score = 30.7 bits (66), Expect = 9.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 146 EKLYETHALAKFTAPVAGTLHFRWISAKEI 175
E L E H + A +AGT+ RW++A ++
Sbjct: 146 EALVERHRVGSLAASLAGTIWLRWVAASKV 175
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.137 0.418
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,221,671
Number of Sequences: 37544
Number of extensions: 2037908
Number of successful extensions: 3797
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3789
Number of HSP's gapped (non-prelim): 14
length of query: 1471
length of database: 14,793,348
effective HSP length: 91
effective length of query: 1380
effective length of database: 11,376,844
effective search space: 15700044720
effective search space used: 15700044720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 66 (30.7 bits)
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