Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002311-TA|BGIBMGA002311-PA|IPR001424|Superoxide
dismutase, copper/zinc binding, IPR008388|ATPase, V1 complex, subunit
S1
(1471 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100675-2|AAC69004.1| 451|Caenorhabditis elegans Hypothetical ... 47 9e-05
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 34 0.87
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 34 0.87
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 34 0.87
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 34 0.87
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 34 0.87
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 34 0.87
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 34 0.87
Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical pr... 33 2.0
U23529-5|AAL32212.2| 385|Caenorhabditis elegans Hypothetical pr... 33 2.0
AF043693-7|AAB97540.1| 171|Caenorhabditis elegans Hypothetical ... 32 2.7
Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical pr... 32 3.5
Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical pr... 31 6.1
>AF100675-2|AAC69004.1| 451|Caenorhabditis elegans Hypothetical
protein Y55H10A.1 protein.
Length = 451
Score = 47.2 bits (107), Expect = 9e-05
Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 1374 SAVLGRSYHC--SQPLVYTSDEAILR----LPDVQMQIF-MDSTERFADAF-------DC 1419
++V G S C SQ + + ++E +R L + Q+Q+F + E++ ++ DC
Sbjct: 340 NSVAGWSLACGQSQAVFFPTNEQSVRIGVALMNTQIQLFNYQNPEKWVESAHFTLQTEDC 399
Query: 1420 IGFTTVPIWSGLMVSFIMLLGLAVSVCMIMDIKTMDRFESNRSKQLTITVNE 1471
G + W G++ + +++ GL M+ ++TMDRF+ + +Q+ I V E
Sbjct: 400 TGTFSSGSWMGIVSALVLIAGLMFGYVMLQSVQTMDRFDDPKQRQIVINVRE 451
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 33.9 bits (74), Expect = 0.87
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 774 NETQVSLFGPYSILGRSVVLHKKSRD 799
+++ SL G YSI+GRSVV+H+K+ D
Sbjct: 124 SDSLASLSGQYSIIGRSVVIHEKTDD 149
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 33.9 bits (74), Expect = 0.87
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 678 GKIEMTQQSEYDVTNVQVTIEGLQ-NVNDYKIHVVPVEKELEFPCEKETLYDTFNPFHVD 736
G I +TQ+SE D ++ I+GL ++ + +H C + FNPF
Sbjct: 16 GTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTN---GCISAGPH--FNPF--G 68
Query: 737 KSLSPPPAQGTADQYELGDLGLKYGLIDEAKSFKSFYNETQVSLFGPYSILGRSVVLHKK 796
K+ P ++ +GDLG D K +T V+L+GP +++GRS+V+H
Sbjct: 69 KTHGGPKSEIR----HVGDLGNVEAGADGVAKIK--LTDTLVTLYGPNTVVGRSMVVHAG 122
Query: 797 SRD 799
D
Sbjct: 123 QDD 125
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 33.9 bits (74), Expect = 0.87
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 678 GKIEMTQQSEYDVTNVQVTIEGLQ-NVNDYKIHVVPVEKELEFPCEKETLYDTFNPFHVD 736
G I +TQ+SE D ++ I+GL ++ + +H C + FNPF
Sbjct: 16 GTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTN---GCISAGPH--FNPF--G 68
Query: 737 KSLSPPPAQGTADQYELGDLGLKYGLIDEAKSFKSFYNETQVSLFGPYSILGRSVVLHKK 796
K+ P ++ +GDLG D K +T V+L+GP +++GRS+V+H
Sbjct: 69 KTHGGPKSEIR----HVGDLGNVEAGADGVAKIK--LTDTLVTLYGPNTVVGRSMVVHAG 122
Query: 797 SRD 799
D
Sbjct: 123 QDD 125
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 33.9 bits (74), Expect = 0.87
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 678 GKIEMTQQSEYDVTNVQVTIEGLQ-NVNDYKIHVVPVEKELEFPCEKETLYDTFNPFHVD 736
G I +TQ+SE D ++ I+GL ++ + +H C + FNPF
Sbjct: 16 GTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTN---GCISAGPH--FNPF--G 68
Query: 737 KSLSPPPAQGTADQYELGDLGLKYGLIDEAKSFKSFYNETQVSLFGPYSILGRSVVLHKK 796
K+ P ++ +GDLG D K +T V+L+GP +++GRS+V+H
Sbjct: 69 KTHGGPKSEIR----HVGDLGNVEAGADGVAKIK--LTDTLVTLYGPNTVVGRSMVVHAG 122
Query: 797 SRD 799
D
Sbjct: 123 QDD 125
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 33.9 bits (74), Expect = 0.87
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 678 GKIEMTQQSEYDVTNVQVTIEGLQ-NVNDYKIHVVPVEKELEFPCEKETLYDTFNPFHVD 736
G I +TQ+SE D ++ I+GL ++ + +H C + FNPF
Sbjct: 38 GTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTN---GCISAGPH--FNPF--G 90
Query: 737 KSLSPPPAQGTADQYELGDLGLKYGLIDEAKSFKSFYNETQVSLFGPYSILGRSVVLHKK 796
K+ P ++ +GDLG D K +T V+L+GP +++GRS+V+H
Sbjct: 91 KTHGGPKSEIR----HVGDLGNVEAGADGVAKIK--LTDTLVTLYGPNTVVGRSMVVHAG 144
Query: 797 SRD 799
D
Sbjct: 145 QDD 147
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 33.9 bits (74), Expect = 0.87
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 774 NETQVSLFGPYSILGRSVVLHKKSRD 799
+++ SL G YSI+GRSVV+H+K+ D
Sbjct: 124 SDSLASLSGQYSIIGRSVVIHEKTDD 149
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 33.9 bits (74), Expect = 0.87
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 774 NETQVSLFGPYSILGRSVVLHKKSRD 799
+++ SL G YSI+GRSVV+H+K+ D
Sbjct: 124 SDSLASLSGQYSIIGRSVVIHEKTDD 149
>Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical protein
C14C10.5 protein.
Length = 1908
Score = 32.7 bits (71), Expect = 2.0
Identities = 43/215 (20%), Positives = 80/215 (37%), Gaps = 14/215 (6%)
Query: 10 ISYLVEPCSSFVLRAYLSQ-HGLHGEIEFSHKNDTLISIRTNL-KPTLQYPDGVWRWTIH 67
I +VE + R L+Q G H + DTL+ + T+ + +
Sbjct: 987 IEMIVEEYVMLLHRKRLAQTQGWHYNEQHKRIQDTLLKVATSTYSENRAKAQNILLGKLR 1046
Query: 68 EFPVDYRDISESRCSEETLGREII-DLTEELGYLIIPGKDHAEFEIKNTLTGLNGLWGRS 126
E P Y+ I G ++ + + YL+I GK + ++ +W
Sbjct: 1047 EHPYSYKHIVNDILEFLQPGNDVTHEQLKGALYLLIDGKKQS-LMLRMEFEQQYKIWPAL 1105
Query: 127 IVLETAERDRIICASILSTEKL---YETHALAKFTAPVAGTLHFRWISAKEIDESDSYIQ 183
I ++ +E+ II + + YE++ L P + W K DE+
Sbjct: 1106 IKVQHSEKPTIIALLETAQNMIVDNYESYRLKYEWEPA--NVEAAWKLLKAADETSPLYD 1163
Query: 184 ADLYHAKAVTDKSEYTEHKWKLFVTDIFDSDKGNY 218
AD+ + + +Y K +T+ ++ K NY
Sbjct: 1164 ADMLQGPSTAELEKY-----KNLLTEKYEKSKSNY 1193
>U23529-5|AAL32212.2| 385|Caenorhabditis elegans Hypothetical
protein C15B12.8 protein.
Length = 385
Score = 32.7 bits (71), Expect = 2.0
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 384 GDIYNPMELDLKTLPPPGLSTQDHYPVGDLLGKYK-DRTEYLN---HKYLLPGLANELS 438
GD+ +P + + + + PG +DH PV D YK D+ +Y N H YL+ +++E S
Sbjct: 279 GDLSHPTKNNQELVTIPGSFIKDHIPVIDGSSPYKVDQCKYTNSPDHHYLIGPVSSENS 337
>AF043693-7|AAB97540.1| 171|Caenorhabditis elegans Hypothetical
protein C34B2.8 protein.
Length = 171
Score = 32.3 bits (70), Expect = 2.7
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 508 LDQPWEDTTIIIESMVHADGANVNNTREHRWAIHEHPPGVDYY-NWTGRCLS 558
L W D T E VH+ G+N TR+H W H G +Y NW + +S
Sbjct: 119 LGDKWWDPTAT-EVFVHSRGSN--ETRDHLWRQHSEYAGPKFYDNWFPQWMS 167
>Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical protein
D2005.5 protein.
Length = 1119
Score = 31.9 bits (69), Expect = 3.5
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 193 TDKSEYTEHKWKLFVTDIFDSDKGNYEDNCNVLQAVFDPENNGEGMSVGDLDSR 246
+D S T+ KW D+F + +D +L A+ D E N E V DLDSR
Sbjct: 1039 SDYSSMTKAKWSDVEQDLFYISEAIEDDFRIMLNALSDTEENIEKKIVLDLDSR 1092
>Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical protein
F31C3.3 protein.
Length = 2029
Score = 31.1 bits (67), Expect = 6.1
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 1382 HCSQPLVYTSDEAILRLPDVQMQIFMDSTERFADAFDC 1419
HC QP+ YT D+ +L D + Q + +E+ A C
Sbjct: 1670 HCEQPVEYTEDQLVLEAEDTK-QRMLTVSEKLATYISC 1706
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.137 0.418
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,187,121
Number of Sequences: 27539
Number of extensions: 1738581
Number of successful extensions: 3244
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3225
Number of HSP's gapped (non-prelim): 27
length of query: 1471
length of database: 12,573,161
effective HSP length: 91
effective length of query: 1380
effective length of database: 10,067,112
effective search space: 13892614560
effective search space used: 13892614560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 66 (30.7 bits)
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