GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002311-TA|BGIBMGA002311-PA|IPR001424|Superoxide
dismutase, copper/zinc binding, IPR008388|ATPase, V1 complex, subunit
S1
         (1471 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    27   0.85 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   6.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     25   6.0  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 27.5 bits (58), Expect = 0.85
 Identities = 18/73 (24%), Positives = 31/73 (42%)

Query: 201 HKWKLFVTDIFDSDKGNYEDNCNVLQAVFDPENNGEGMSVGDLDSRLGLIKVATDAKVKK 260
           H     +T +F   K   ED    LQ +F+ +     M     +  L +I++     VK+
Sbjct: 7   HYQHYHITPVFTKQKKVKEDTELNLQTIFNEDKLDNLMDKQFKNKSLPVIEIWDQMTVKE 66

Query: 261 VRTLYKNDVIDIL 273
           +    K D+ D+L
Sbjct: 67  LANSAKRDINDVL 79


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 1142 FNNQDSVPLSSGYFPRLRKMLEGQTVLVLPQDFLDVHPDYISNETQMLTLQGPWSER 1198
            F + + +P     +  + K LEG +    P  F   + DY+  ET+  +   PW+++
Sbjct: 346  FYHPEDLPFIKDIYETVIK-LEGASFRSKPYRFGIQNGDYVVLETEWSSFINPWTKK 401


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 1142 FNNQDSVPLSSGYFPRLRKMLEGQTVLVLPQDFLDVHPDYISNETQMLTLQGPWSER 1198
            F + + +P     +  + K LEG +    P  F   + DY+  ET+  +   PW+++
Sbjct: 52   FYHPEDLPFIKDIYETVIK-LEGASFRSKPYRFGIQNGDYVVLETEWSSFINPWTKK 107


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.137    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 452,745
Number of Sequences: 429
Number of extensions: 21901
Number of successful extensions: 41
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 4
length of query: 1471
length of database: 140,377
effective HSP length: 67
effective length of query: 1404
effective length of database: 111,634
effective search space: 156734136
effective search space used: 156734136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)