GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002310-TA|BGIBMGA002310-PA|undefined
         (1488 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    27   0.96 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       26   1.7  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    25   3.9  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    25   3.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           25   3.9  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   5.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   5.1  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    24   6.8  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 27.1 bits (57), Expect = 0.96
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)

Query: 427 NSISRKTRSTIDPTLLGTSTPYVA--KSTRSG 456
           N+IS+ T ST+DP     S+P ++   ST+SG
Sbjct: 50  NAISQITNSTLDPGRKSPSSPRISSPSSTKSG 81


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 645 KGSPNNSDVTDEDAPQPDDEEVITPKSAVKPVQEAVKNKHSTAKKPQSK 693
           KG     D T  ++ + D+E   T  S V+ VQE  K + S +    +K
Sbjct: 419 KGPAFKVDPTQVESEEEDEETSTTVFSNVEVVQEEAKKEESDSNNNNNK 467



 Score = 24.2 bits (50), Expect = 6.8
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 9/88 (10%)

Query: 1070 PATNEIIPSPKKTRSKAKPASPVKTRPTRGRNRTDNSDNTKKRRASLVIPKKSPVLSPKP 1129
            P  +E + SPK  + +    + +    +  R   DN D+ ++   SL   +KS + S K 
Sbjct: 108  PPNSEPLVSPKSEKEEKDMETTLTPCASPNRKPDDNQDHLRRLEMSL---EKSGLFSSKT 164

Query: 1130 TKVS------RNKNDDIEIEIKVLISPK 1151
            ++ S      ++ ND  E + + L  PK
Sbjct: 165  SEHSVDELSGKSDNDAEEYDEQSLRVPK 192


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
            Deformed protein.
          Length = 412

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 1076 IPSPKKTRSKAKPASPVKTRPTRGRNRTDN---SDNTKKRRA 1114
            +P+ K  R K  PA    T   + R +T N   ++N  KR++
Sbjct: 294  LPNTKNVRRKTNPAGVTTTTKGKVRAKTQNATPANNNDKRKS 335


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 729 QLFEEDEDVISVKKPSRNTIAVADRTPDSSILDQTEAIT--PDMFISPINTPSHSPNMT 785
           Q+ +E+ D+   +   +   A+ ++ P+  ++      T  PD F++  N P    NMT
Sbjct: 69  QVLDEENDIN--QGGLKRVSALKEKNPNLKVMLSVGGATASPDSFVAAANDPEKMKNMT 125


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 1076 IPSPKKTRSKAKPASPVKTRPTRGRNRTDN---SDNTKKRRA 1114
            +P+ K  R K  PA    T   + R +T N   ++N  KR++
Sbjct: 294  LPNTKNVRRKTNPAGVTTTTKGKVRAKTQNATPANNNDKRKS 335


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 15/56 (26%), Positives = 24/56 (42%)

Query: 239 SAKKSALKDPKRNTRKTESIKFDLSNLENGAQMSSDVLTVNDTTKRSDGDDTMSEE 294
           S K S   D   +  KT+    + SNL +  Q+   +    D TK     +T +E+
Sbjct: 299 SMKLSKNNDQCLDLSKTKETNLEKSNLNHNEQLRKYLCKNEDETKNHYSKNTYNEQ 354


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 15/56 (26%), Positives = 24/56 (42%)

Query: 239 SAKKSALKDPKRNTRKTESIKFDLSNLENGAQMSSDVLTVNDTTKRSDGDDTMSEE 294
           S K S   D   +  KT+    + SNL +  Q+   +    D TK     +T +E+
Sbjct: 191 SMKLSKNNDQCLDLSKTKETNLEKSNLNHNEQLRKYLCKNEDETKNHYSKNTYNEQ 246


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 553 KRNEITNGSVISSTNEGNTTPEDR--HSPEDVGTPMLSIQTLLNNSS 597
           K  ++ N +V+SSTN+    P+ +     ED  +P  S+   + +SS
Sbjct: 84  KSRKLNNNNVVSSTNQEIRGPKRKTWKVEEDSPSPTSSVSPEVKDSS 130


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.307    0.123    0.327 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 274,968
Number of Sequences: 317
Number of extensions: 11021
Number of successful extensions: 29
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 10
length of query: 1488
length of database: 114,650
effective HSP length: 66
effective length of query: 1422
effective length of database: 93,728
effective search space: 133281216
effective search space used: 133281216
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 49 (23.8 bits)