GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002309-TA|BGIBMGA002309-PA|IPR004301|Nucleoplasmin
         (187 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0536 - 25357355-25357411,25357463-25357588,25357764-253578...    29   3.0  
02_02_0096 - 6727844-6727957,6728149-6728247,6728332-6728410,672...    28   5.3  

>03_05_0536 -
           25357355-25357411,25357463-25357588,25357764-25357892,
           25358015-25358164,25358253-25358373,25360946-25361247
          Length = 294

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 9/104 (8%)

Query: 4   EFFYGVTLSSSHQSETWDPEAKA-EYPRSNKLVIRQA------LLGPDA-KPDELNVIQV 55
           E F      SSH    +D EA+A +  RS+  ++ +A      +L   A + D L   Q 
Sbjct: 136 ELFERANGESSHVLRIFDDEAQAMQSARSSSRMLDEAYETGVAILHKYADQRDRLKSAQR 195

Query: 56  EAMSLQEAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSG 99
           +A+ +   V L  +VLK+ E RH R+D     A +  T+V+  G
Sbjct: 196 KALDILNTVGLSNSVLKLIERRH-RVDKWIAYAGMMITVVRYKG 238


>02_02_0096 -
           6727844-6727957,6728149-6728247,6728332-6728410,
           6728534-6728634,6728740-6728808,6729180-6729220,
           6729992-6730836,6730924-6731027,6731479-6732354
          Length = 775

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 35  VIRQALLGPDAKPDELNV---IQVEAMSLQE-AVKLPVAVLKVGESRH 78
           ++  A+ GP    DE+N    ++  A+ LQ  ++ LP+ +L++G SRH
Sbjct: 239 LVVDAMGGPVDDADEMNREWGVKSRALCLQRNSIVLPLGLLRIGLSRH 286


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.310    0.127    0.351 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,828,279
Number of Sequences: 37544
Number of extensions: 106659
Number of successful extensions: 189
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 189
Number of HSP's gapped (non-prelim): 2
length of query: 187
length of database: 14,793,348
effective HSP length: 78
effective length of query: 109
effective length of database: 11,864,916
effective search space: 1293275844
effective search space used: 1293275844
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 57 (27.1 bits)