Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002309-TA|BGIBMGA002309-PA|IPR004301|Nucleoplasmin
(187 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC054868-1|AAH54868.1| 178|Homo sapiens nucleophosmin/nucleopla... 48 3e-05
BC041067-1|AAH41067.1| 178|Homo sapiens nucleophosmin/nucleopla... 48 3e-05
AY049737-1|AAL12172.1| 178|Homo sapiens nucleophosmin/nucleopla... 48 3e-05
AF081280-1|AAC31609.1| 178|Homo sapiens nucleoplasmin-3 protein. 48 3e-05
AF079325-1|AAD51496.1| 178|Homo sapiens nucleophosmin/nucleopla... 44 4e-04
BC068078-1|AAH68078.1| 136|Homo sapiens NPM2 protein protein. 34 0.34
AY262114-1|AAP33135.1| 214|Homo sapiens nucleoplasmin 2 variant... 34 0.34
AY262113-1|AAP33134.1| 214|Homo sapiens nucleoplasmin 2 variant... 34 0.34
DQ227317-1|ABB51162.1| 603|Homo sapiens synphilin-1A protein. 32 1.0
BC094759-1|AAH94759.1| 603|Homo sapiens SNCAIP protein protein. 32 1.0
BC040552-1|AAH40552.1| 1016|Homo sapiens SNCAIP protein protein. 32 1.0
AK001617-1|BAA91791.1| 597|Homo sapiens protein ( Homo sapiens ... 32 1.0
AF167306-1|AAG17478.1| 919|Homo sapiens synuclein alpha interac... 32 1.0
AF076929-1|AAD30362.1| 919|Homo sapiens synphilin 1 protein. 32 1.0
AB110789-1|BAD19018.1| 859|Homo sapiens synphilin-1b protein pr... 32 1.0
AB110788-1|BAD19017.1| 919|Homo sapiens synphilin-1a protein pr... 32 1.0
BC033743-1|AAH33743.1| 553|Homo sapiens SNCAIP protein protein. 32 1.4
>BC054868-1|AAH54868.1| 178|Homo sapiens
nucleophosmin/nucleoplasmin, 3 protein.
Length = 178
Score = 47.6 bits (108), Expect = 3e-05
Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 3 DEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQ- 61
D FF+G LS +S T+ E + + + L + L AK DE NV++V A +
Sbjct: 35 DSFFFGCELSGHTRSFTFKVEEEDD--AEHVLALTMLCLTEGAK-DECNVVEVVARNHDH 91
Query: 62 EAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 101
+ + +PVA LK+ + LD PVTF L GSGPV
Sbjct: 92 QEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSGPV 131
>BC041067-1|AAH41067.1| 178|Homo sapiens
nucleophosmin/nucleoplasmin, 3 protein.
Length = 178
Score = 47.6 bits (108), Expect = 3e-05
Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 3 DEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQ- 61
D FF+G LS +S T+ E + + + L + L AK DE NV++V A +
Sbjct: 35 DSFFFGCELSGHTRSFTFKVEEEDD--AEHVLALTMLCLTEGAK-DECNVVEVVARNHDH 91
Query: 62 EAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 101
+ + +PVA LK+ + LD PVTF L GSGPV
Sbjct: 92 QEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSGPV 131
>AY049737-1|AAL12172.1| 178|Homo sapiens
nucleophosmin/nucleoplasmin 3 protein.
Length = 178
Score = 47.6 bits (108), Expect = 3e-05
Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 3 DEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQ- 61
D FF+G LS +S T+ E + + + L + L AK DE NV++V A +
Sbjct: 35 DSFFFGCELSGHTRSFTFKVEEEDD--AEHVLALTMLCLTEGAK-DECNVVEVVARNHDH 91
Query: 62 EAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 101
+ + +PVA LK+ + LD PVTF L GSGPV
Sbjct: 92 QEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSGPV 131
>AF081280-1|AAC31609.1| 178|Homo sapiens nucleoplasmin-3 protein.
Length = 178
Score = 47.6 bits (108), Expect = 3e-05
Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 3 DEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQ- 61
D FF+G LS +S T+ E + + + L + L AK DE NV++V A +
Sbjct: 35 DSFFFGCELSGHTRSFTFKVEEEDD--AEHVLALTMLCLTEGAK-DECNVVEVVARNHDH 91
Query: 62 EAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 101
+ + +PVA LK+ + LD PVTF L GSGPV
Sbjct: 92 QEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSGPV 131
>AF079325-1|AAD51496.1| 178|Homo sapiens
nucleophosmin/nucleoplasmin3 protein.
Length = 178
Score = 43.6 bits (98), Expect = 4e-04
Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query: 3 DEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQ- 61
D FF+G LS +S T+ E + + + L + L AK DE V++V A +
Sbjct: 35 DSFFFGCELSGHTRSFTFKVEEEDD--ADDVLALTMLCLTEGAK-DECIVVKVVARNHDH 91
Query: 62 EAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 101
+ + +PVA LK+ + LD PVTF L GSGPV
Sbjct: 92 QEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSGPV 131
>BC068078-1|AAH68078.1| 136|Homo sapiens NPM2 protein protein.
Length = 136
Score = 33.9 bits (74), Expect = 0.34
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 14 SHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKL-PVAVLK 72
S + TW + E +S +L++ LG AK +E++ +++ + QE K+ PV +
Sbjct: 24 SQERRTWTFRPQLEGKQSCRLLLHTICLGEKAK-EEMHRVEILPPANQEDKKMQPVTIAS 82
Query: 73 VGESRHVRLDIEFPDA--PVTFTLVQGSGPV 101
+ S + + PVTF L GSGPV
Sbjct: 83 LQASVLPMVSMVGVQLSPPVTFQLRAGSGPV 113
>AY262114-1|AAP33135.1| 214|Homo sapiens nucleoplasmin 2 variant 2
protein.
Length = 214
Score = 33.9 bits (74), Expect = 0.34
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 14 SHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKL-PVAVLK 72
S + TW + E +S +L++ LG AK +E++ +++ + QE K+ PV +
Sbjct: 24 SQERRTWTFRPQLEGKQSCRLLLHTICLGEKAK-EEMHRVEILPPANQEDKKMQPVTIAS 82
Query: 73 VGESRHVRLDIEFPDA--PVTFTLVQGSGPV 101
+ S + + PVTF L GSGPV
Sbjct: 83 LQASVLPMVSMVGVQLSPPVTFQLRAGSGPV 113
>AY262113-1|AAP33134.1| 214|Homo sapiens nucleoplasmin 2 variant 1
protein.
Length = 214
Score = 33.9 bits (74), Expect = 0.34
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 14 SHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKL-PVAVLK 72
S + TW + E +S +L++ LG AK +E++ +++ + QE K+ PV +
Sbjct: 24 SQERRTWTFRPQLEGKQSCRLLLHTICLGEKAK-EEMHRVEILPPANQEDKKMQPVTIAS 82
Query: 73 VGESRHVRLDIEFPDA--PVTFTLVQGSGPV 101
+ S + + PVTF L GSGPV
Sbjct: 83 LQASVLPMVSMVGVQLSPPVTFQLRAGSGPV 113
>DQ227317-1|ABB51162.1| 603|Homo sapiens synphilin-1A protein.
Length = 603
Score = 32.3 bits (70), Expect = 1.0
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 12 SSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKLPVAVL 71
S S SE+ +P+ +++YP S + Q P + Q A S + A+K P +
Sbjct: 381 SPSPTSESSEPDLESQYPGSGSIPPNQPSGDPQQPSPDSTAAQKVATSPKSALKSPSSKR 440
Query: 72 KVGESRHVRLDIEFP 86
+ ++ +R+ E P
Sbjct: 441 RTSQNLKLRVTFEEP 455
>BC094759-1|AAH94759.1| 603|Homo sapiens SNCAIP protein protein.
Length = 603
Score = 32.3 bits (70), Expect = 1.0
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 12 SSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKLPVAVL 71
S S SE+ +P+ +++YP S + Q P + Q A S + A+K P +
Sbjct: 381 SPSPTSESSEPDLESQYPGSGSIPPNQPSGDPQQPSPDSTAAQKVATSPKSALKSPSSKR 440
Query: 72 KVGESRHVRLDIEFP 86
+ ++ +R+ E P
Sbjct: 441 RTSQNLKLRVTFEEP 455
>BC040552-1|AAH40552.1| 1016|Homo sapiens SNCAIP protein protein.
Length = 1016
Score = 32.3 bits (70), Expect = 1.0
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 12 SSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKLPVAVL 71
S S SE+ +P+ +++YP S + Q P + Q A S + A+K P +
Sbjct: 794 SPSPTSESSEPDLESQYPGSGSIPPNQPSGDPQQPSPDSTAAQKVATSPKSALKSPSSKR 853
Query: 72 KVGESRHVRLDIEFP 86
+ ++ +R+ E P
Sbjct: 854 RTSQNLKLRVTFEEP 868
>AK001617-1|BAA91791.1| 597|Homo sapiens protein ( Homo sapiens
cDNA FLJ10755 fis, clone NT2RP3004569, weakly similar to
ANKYRIN, BRAIN VARIANT 1. ).
Length = 597
Score = 32.3 bits (70), Expect = 1.0
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 12 SSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKLPVAVL 71
S S SE+ +P+ +++YP S + Q P + Q A S + A+K P +
Sbjct: 375 SPSPTSESSEPDLESQYPGSGSIPPNQPSGDPQQPSPDSTAAQKVATSPKSALKSPSSKR 434
Query: 72 KVGESRHVRLDIEFP 86
+ ++ +R+ E P
Sbjct: 435 RTSQNLKLRVTFEEP 449
>AF167306-1|AAG17478.1| 919|Homo sapiens synuclein alpha
interacting protein protein.
Length = 919
Score = 32.3 bits (70), Expect = 1.0
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 12 SSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKLPVAVL 71
S S SE+ +P+ +++YP S + Q P + Q A S + A+K P +
Sbjct: 747 SPSPTSESSEPDLESQYPGSGSIPPNQPSGDPQQPSPDSTAAQKVATSPKSALKSPSSKR 806
Query: 72 KVGESRHVRLDIEFP 86
+ ++ +R+ E P
Sbjct: 807 RTSQNLKLRVTFEEP 821
>AF076929-1|AAD30362.1| 919|Homo sapiens synphilin 1 protein.
Length = 919
Score = 32.3 bits (70), Expect = 1.0
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 12 SSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKLPVAVL 71
S S SE+ +P+ +++YP S + Q P + Q A S + A+K P +
Sbjct: 747 SPSPTSESSEPDLESQYPGSGSIPPNQPSGDPQQPSPDSTAAQKVATSPKSALKSPSSKR 806
Query: 72 KVGESRHVRLDIEFP 86
+ ++ +R+ E P
Sbjct: 807 RTSQNLKLRVTFEEP 821
>AB110789-1|BAD19018.1| 859|Homo sapiens synphilin-1b protein
protein.
Length = 859
Score = 32.3 bits (70), Expect = 1.0
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 12 SSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKLPVAVL 71
S S SE+ +P+ +++YP S + Q P + Q A S + A+K P +
Sbjct: 687 SPSPTSESSEPDLESQYPGSGSIPPNQPSGDPQQPSPDSTAAQKVATSPKSALKSPSSKR 746
Query: 72 KVGESRHVRLDIEFP 86
+ ++ +R+ E P
Sbjct: 747 RTSQNLKLRVTFEEP 761
>AB110788-1|BAD19017.1| 919|Homo sapiens synphilin-1a protein
protein.
Length = 919
Score = 32.3 bits (70), Expect = 1.0
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 12 SSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKLPVAVL 71
S S SE+ +P+ +++YP S + Q P + Q A S + A+K P +
Sbjct: 747 SPSPTSESSEPDLESQYPGSGSIPPNQPSGDPQQPSPDSTAAQKVATSPKSALKSPSSKR 806
Query: 72 KVGESRHVRLDIEFP 86
+ ++ +R+ E P
Sbjct: 807 RTSQNLKLRVTFEEP 821
>BC033743-1|AAH33743.1| 553|Homo sapiens SNCAIP protein protein.
Length = 553
Score = 31.9 bits (69), Expect = 1.4
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 12 SSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKLPVAVL 71
S S SE+ +P+ +++YP S + Q P + Q A S + A+K P +
Sbjct: 381 SPSPTSESSEPDLESQYPGSGSIPPNQPSGDPQQPSPDSTAAQKVATSPKSALKPPSSKR 440
Query: 72 KVGESRHVRLDIEFP 86
+ ++ +R+ E P
Sbjct: 441 RTSQNLKLRVTFEEP 455
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.310 0.127 0.351
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,796,300
Number of Sequences: 224733
Number of extensions: 538929
Number of successful extensions: 766
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 752
Number of HSP's gapped (non-prelim): 17
length of query: 187
length of database: 73,234,838
effective HSP length: 86
effective length of query: 101
effective length of database: 53,907,800
effective search space: 5444687800
effective search space used: 5444687800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 62 (29.1 bits)
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