GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002309-TA|BGIBMGA002309-PA|IPR004301|Nucleoplasmin
         (187 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X99293-1|CAA67679.1|  152|Drosophila melanogaster CRP1 protein p...   102   3e-22
U59498-1|AAC47295.1|  152|Drosophila melanogaster nucleoplasmin-...   102   3e-22
AY119592-1|AAM50246.1|  152|Drosophila melanogaster LD16456p pro...   102   3e-22
AE014297-4506|AAF56988.1|  152|Drosophila melanogaster CG7917-PA...   102   3e-22
AE014297-4505|AAF56987.1|  156|Drosophila melanogaster CG7911-PA...    96   2e-20
U59497-1|AAC47294.1|  121|Drosophila melanogaster nucleoplasmin-...    73   2e-13

>X99293-1|CAA67679.1|  152|Drosophila melanogaster CRP1 protein
           protein.
          Length = 152

 Score =  102 bits (244), Expect = 3e-22
 Identities = 50/101 (49%), Positives = 72/101 (71%), Gaps = 4/101 (3%)

Query: 1   MTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSL 60
           M +E FYGVTL++   S TWD +   +Y R  KLVI+Q LLG +AK +E NV++V     
Sbjct: 1   MAEESFYGVTLTAESDSVTWDVDE--DYARGQKLVIKQILLGAEAKENEFNVVEVNTP-- 56

Query: 61  QEAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 101
           +++V++P+AVLK GE+R V  D+EF ++ VTF L++GSGPV
Sbjct: 57  KDSVQIPIAVLKAGETRAVNPDVEFYESKVTFKLIKGSGPV 97


>U59498-1|AAC47295.1|  152|Drosophila melanogaster
           nucleoplasmin-like protein protein.
          Length = 152

 Score =  102 bits (244), Expect = 3e-22
 Identities = 50/101 (49%), Positives = 72/101 (71%), Gaps = 4/101 (3%)

Query: 1   MTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSL 60
           M +E FYGVTL++   S TWD +   +Y R  KLVI+Q LLG +AK +E NV++V     
Sbjct: 1   MAEESFYGVTLTAESDSVTWDVDE--DYARGQKLVIKQILLGAEAKENEFNVVEVNTP-- 56

Query: 61  QEAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 101
           +++V++P+AVLK GE+R V  D+EF ++ VTF L++GSGPV
Sbjct: 57  KDSVQIPIAVLKAGETRAVNPDVEFYESKVTFKLIKGSGPV 97


>AY119592-1|AAM50246.1|  152|Drosophila melanogaster LD16456p
           protein.
          Length = 152

 Score =  102 bits (244), Expect = 3e-22
 Identities = 50/101 (49%), Positives = 72/101 (71%), Gaps = 4/101 (3%)

Query: 1   MTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSL 60
           M +E FYGVTL++   S TWD +   +Y R  KLVI+Q LLG +AK +E NV++V     
Sbjct: 1   MAEESFYGVTLTAESDSVTWDVDE--DYARGQKLVIKQILLGAEAKENEFNVVEVNTP-- 56

Query: 61  QEAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 101
           +++V++P+AVLK GE+R V  D+EF ++ VTF L++GSGPV
Sbjct: 57  KDSVQIPIAVLKAGETRAVNPDVEFYESKVTFKLIKGSGPV 97


>AE014297-4506|AAF56988.1|  152|Drosophila melanogaster CG7917-PA
           protein.
          Length = 152

 Score =  102 bits (244), Expect = 3e-22
 Identities = 50/101 (49%), Positives = 72/101 (71%), Gaps = 4/101 (3%)

Query: 1   MTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSL 60
           M +E FYGVTL++   S TWD +   +Y R  KLVI+Q LLG +AK +E NV++V     
Sbjct: 1   MAEESFYGVTLTAESDSVTWDVDE--DYARGQKLVIKQILLGAEAKENEFNVVEVNTP-- 56

Query: 61  QEAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 101
           +++V++P+AVLK GE+R V  D+EF ++ VTF L++GSGPV
Sbjct: 57  KDSVQIPIAVLKAGETRAVNPDVEFYESKVTFKLIKGSGPV 97


>AE014297-4505|AAF56987.1|  156|Drosophila melanogaster CG7911-PA
           protein.
          Length = 156

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 52/107 (48%), Positives = 70/107 (65%), Gaps = 6/107 (5%)

Query: 1   MTDEFFYGVTLSSSHQSETWD-PEAKAEY-PRSNKLVIRQALLGPDAKPDELNVIQVEAM 58
           M  E FYGVTLS       ++ P+   EY   S+KL+I+Q  LGP+AK  E NV+Q E  
Sbjct: 1   MESESFYGVTLSEKEAIAQFEVPDVPEEYIVHSHKLIIKQISLGPEAKTGEFNVVQAETN 60

Query: 59  ----SLQEAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 101
                 ++ +K+P+AVLKVGE+R +R ++EFP+  VTF LVQGSGPV
Sbjct: 61  INDDGEKKTLKIPIAVLKVGETRSLRPNVEFPNGSVTFKLVQGSGPV 107


>U59497-1|AAC47294.1|  121|Drosophila melanogaster
           nucleoplasmin-like protein-short protein.
          Length = 121

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 34/68 (50%), Positives = 52/68 (76%), Gaps = 2/68 (2%)

Query: 34  LVIRQALLGPDAKPDELNVIQVEAMSLQEAVKLPVAVLKVGESRHVRLDIEFPDAPVTFT 93
           +VI+Q LLG +AK +E NV++V     +++V++P+AVLK GE+R V  D+EF ++ VTF 
Sbjct: 1   MVIKQILLGAEAKENEFNVVEVNTP--KDSVQIPIAVLKAGETRAVNPDVEFYESKVTFK 58

Query: 94  LVQGSGPV 101
           L++GSGPV
Sbjct: 59  LIKGSGPV 66


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.310    0.127    0.351 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,403,317
Number of Sequences: 52641
Number of extensions: 176547
Number of successful extensions: 243
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 6
length of query: 187
length of database: 24,830,863
effective HSP length: 81
effective length of query: 106
effective length of database: 20,566,942
effective search space: 2180095852
effective search space used: 2180095852
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 59 (27.9 bits)