GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002308-TA|BGIBMGA002308-PA|IPR006625|Insect
pheromone/odorant binding protein PhBP, IPR006170|Pheromone/general
odorant binding protein, PBP/GOBP
         (137 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81486-9|CAB03991.1|  430|Caenorhabditis elegans Hypothetical pr...    28   2.1  
U97008-11|AAK72054.1|  224|Caenorhabditis elegans Hypothetical p...    28   2.7  
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U50312-5|AAA92322.1|  369|Caenorhabditis elegans Hypothetical pr...    26   8.3  
U28940-6|AAA68352.1|  925|Caenorhabditis elegans Hypothetical pr...    26   8.3  

>Z81486-9|CAB03991.1|  430|Caenorhabditis elegans Hypothetical
           protein C53A5.11 protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 39  ESSVDLNLVEKVNAGTDLATITDGKLKCYIKC--TMETAGMMSDGVVDVEAVL 89
           E   +L  +  ++  T L  + D KLK YI    + E   M+ DGV++++ +L
Sbjct: 115 EGKDNLKCITMIHDITSLMEVADTKLKNYINTLNSKEQIFMVDDGVLNMDPIL 167


>U97008-11|AAK72054.1|  224|Caenorhabditis elegans Hypothetical
           protein C03G6.5 protein.
          Length = 224

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 31/112 (27%), Positives = 43/112 (38%), Gaps = 14/112 (12%)

Query: 35  NCADESSVDLN-LVEKVNAGTDLAT-ITDGKLKCYIKCTMETAGMMSDGVVDVEAVLSLL 92
           NC  +S  + +  VE +    D    ++DG  KC  K   E      D    +   + L 
Sbjct: 113 NCTTKSDDEKDKYVESIKQYCDAVVYVSDGFSKCSDKLN-EKKSKCFDDWDPIPNKIHLE 171

Query: 93  PDSLKT---KNEASLKKCDTQKGSDDCDTAYLTQIC----WQAANKADYFLI 137
            D  K    KNEA    C T  G DDC    +T+ C    W +  K  +  I
Sbjct: 172 EDEAKIEKIKNEA----CKTYFGKDDCMKKEITETCGKEEWDSFRKVIFHFI 219


>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical
           protein C25H3.8 protein.
          Length = 2148

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 42  VDLNLVEKVNAGTDLATITDGKLKCYIKCTMETAGMMSDGVVDVEAVLSLLPDSLKTKNE 101
           VDLNL      G     + DGK + +    +E A +  D   D ++ L L+ + ++  + 
Sbjct: 320 VDLNLEVPRKLGEQQKAVLDGKWQPFANVKLERARISFDAFEDNQSELDLICERVELVDT 379

Query: 102 AS 103
            S
Sbjct: 380 TS 381


>U50312-5|AAA92322.1|  369|Caenorhabditis elegans Hypothetical
           protein B0222.5 protein.
          Length = 369

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 18/64 (28%), Positives = 25/64 (39%)

Query: 46  LVEKVNAGTDLATITDGKLKCYIKCTMETAGMMSDGVVDVEAVLSLLPDSLKTKNEASLK 105
           L+   N  T   T+ D  LKC      ET    S+    V    +L+    +T N  +  
Sbjct: 23  LLRARNPKTGPCTLNDDGLKCNENGYYETVQCNSESCYCVTPHTALVAYDTRTNNPKTAP 82

Query: 106 KCDT 109
           KC T
Sbjct: 83  KCGT 86


>U28940-6|AAA68352.1|  925|Caenorhabditis elegans Hypothetical
           protein T24H7.2 protein.
          Length = 925

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 2/39 (5%)

Query: 62  GKLKCYIKCTMETAGMMSDGVVDVEAVLSLLPDSLKTKN 100
           GK++ + K  ++  G + D +VDVE  +S L ++LK ++
Sbjct: 490 GKIESFTKQQVQEIGSLLDNLVDVE--ISGLSEALKNRS 526


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.130    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,030,423
Number of Sequences: 27539
Number of extensions: 106601
Number of successful extensions: 272
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 270
Number of HSP's gapped (non-prelim): 5
length of query: 137
length of database: 12,573,161
effective HSP length: 74
effective length of query: 63
effective length of database: 10,535,275
effective search space: 663722325
effective search space used: 663722325
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)