GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002307-TA|BGIBMGA002307-PA|IPR001128|Cytochrome P450
         (458 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...   141   1e-35
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    82   1e-17
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    81   1e-17
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    25   1.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   4.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   7.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   9.3  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score =  141 bits (341), Expect = 1e-35
 Identities = 69/206 (33%), Positives = 122/206 (59%), Gaps = 4/206 (1%)

Query: 257 EIRDEVDTIIVAGYDTSSWVLTLVMMALGSYPEIQNKVYQEVSSMFGDSEADVDKSHYPG 316
           E++++VDTI+  G+DT++   +  +  +G +P+IQ KV QE+  +FGDS+          
Sbjct: 337 EVKEQVDTIMFEGHDTTASGSSFFLAVMGCHPDIQEKVIQELDEIFGDSDRPATFQDTLE 396

Query: 317 LVYVEAVLKETLRLYPIVPIALRQTESDIELK--NYTIPADSNCVLGIYGLNRHPVWGPD 374
           + Y+E  L ETLR+YP VP+  R+ ++D++L   +YTIPA    V+G + L+R P   P+
Sbjct: 397 MKYLERCLLETLRMYPPVPLIAREIKTDLKLASGDYTIPAGCTVVIGTFKLHRQPHIYPN 456

Query: 375 AHTFRPERWLEPGGVPDDPNAFAGFSVGKRTCIGKVYALMSMKTTLVHLIRRYKVTADIS 434
              F P+ +L          AF  FS G R+C+G+ YA++ +K  L  ++R ++V +D+ 
Sbjct: 457 PDVFDPDNFLPEKTANRHYYAFVPFSAGPRSCVGRKYAMLKLKIVLSTILRNFRVRSDVK 516

Query: 435 KVEFKM--DVLMTPVNNCNVKFELRK 458
           + EF++  D+++   +   ++ E RK
Sbjct: 517 ESEFRLQADIILKRADGFKIRLEPRK 542



 Score = 97.5 bits (232), Expect = 2e-22
 Identities = 51/177 (28%), Positives = 96/177 (54%), Gaps = 4/177 (2%)

Query: 49  ITDPVD-NLKIANGTFL-KHFAYRFTSHWLGDGLITSSGETWKRHRKLLNPAFNQQILNS 106
           + DP D  + +++  ++ K   YRF   WLGDGL+ S+G+ W+ HRKL+ P F+  +L S
Sbjct: 93  LIDPRDVEIILSSNVYIDKSTEYRFFKPWLGDGLLISTGQKWRNHRKLIAPTFHLNVLKS 152

Query: 107 FIGVFNDESRKLVSEIGNEMAKGPVEVTTPFRQMAFRLLFLTAFGIPVEDSDFNQ-KYIH 165
           FI +FN  +R +V ++  E  K   +      ++   +L  TA G+     D N  +Y  
Sbjct: 153 FIDLFNANARSVVEKMRKENGK-EFDCHNYMSELTVDILLETAMGVSKPTRDHNAFEYAM 211

Query: 166 SVDKLLSMLIYRFQNVLLHNSFIYKISGLKKKEEQIVETVHAMSNMIIKRKREASKN 222
           +V K+  +L  R   + L   +++ ++   K + +++E +H ++  +I+ K+E  K+
Sbjct: 212 AVMKMCDILHLRHTKIWLRPDWLFNLTKYGKNQIKLLEIIHGLTKKVIQLKKEEYKS 268


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 81.8 bits (193), Expect = 1e-17
 Identities = 57/206 (27%), Positives = 97/206 (47%), Gaps = 10/206 (4%)

Query: 257 EIRDEVDTI---IVAGYDTSSWVLTLVMMALGSYPEIQNKVYQEVSSMFGDSEADVDKSH 313
           +IRD+   I   I AG  T    L  +   +G  P +QNK+Y+E  ++   +  D+   +
Sbjct: 316 DIRDKKAAIVDFIAAGIHTLGNTLVFLFDLIGRNPTVQNKLYEETYAL-APAGCDLTIDN 374

Query: 314 YPGLVYVEAVLKETLRLYPIVPIALRQTESDIELKNYTIPADSNCVLG--IYGLNRHPVW 371
                Y+ A + E+LRL P      R  +  IEL  Y + A +  +L   I GLN     
Sbjct: 375 LRKAKYLRACITESLRLIPTTTCIARILDEPIELSGYRLTAGTVVLLHTWIAGLNEENF- 433

Query: 372 GPDAHTFRPERWLEPGGVPDDPNAFAGFSVGKRTCIGKVYALMSMKTTLVHLIRRYKVTA 431
             DA  + PERW  P   P  P   A F  G+R C GK +  ++++  L  +IR +++  
Sbjct: 434 -KDAKKYLPERWTTPT-TPHSPLLVAPFGAGRRICPGKRFVDLALQLILAKIIREFEIIV 491

Query: 432 DISKVEFKMDVLMTPVNNCNVKFELR 457
           +  +++ + + ++ P    ++ F  R
Sbjct: 492 E-EELDLQFEFILAPKGPVSLGFRDR 516


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 81.4 bits (192), Expect = 1e-17
 Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 2/165 (1%)

Query: 267 VAGYDTSSWVLTLVMMALGSYPEIQNKVYQEVSSMFGDSEADVDKSHYPGLVYVEAVLKE 326
           +AG++TSS  ++  +  L    ++Q K+ +E+++    +  ++       + Y++ V KE
Sbjct: 303 LAGFETSSTTMSNALYELALNQDVQKKLREEINTFCPKNNKELKYDDIKEMEYLDKVFKE 362

Query: 327 TLRLYPIVPIALRQTESDIELKN--YTIPADSNCVLGIYGLNRHPVWGPDAHTFRPERWL 384
           TLR+YP   I +R+  SD    +   TIP +    +  + ++R     P+  +F PER+ 
Sbjct: 363 TLRMYPPASILMRKAISDYTFNDTKITIPKEMKIWIPAFAIHRDSAIYPNPDSFDPERFD 422

Query: 385 EPGGVPDDPNAFAGFSVGKRTCIGKVYALMSMKTTLVHLIRRYKV 429
           +       P  +  F  G R CIG  +A+   K  L+ ++R +KV
Sbjct: 423 QDAMASRHPMHYLPFGDGPRNCIGARFAVYQTKVGLITILRNHKV 467


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 36  VTVARLALQDYYVITDPVDNLKIANGTFLKHFAYRFTSHWLGDGLITS 83
           + +  +AL  Y+ ITDP++    A    LK         W+  G I+S
Sbjct: 125 LNLCAIALDRYWAITDPIN---YAQKRTLKRVLATIAGVWILSGAISS 169


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 274 SWVLTL-VMMALGSYPEIQNKVYQE 297
           S+ L L  ++ALGSY +  N VY++
Sbjct: 290 SYALGLGALVALGSYNKFNNNVYKD 314


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 274 SWVLTL-VMMALGSYPEIQNKVYQE 297
           S+ L L  ++ALGSY +  N VY++
Sbjct: 343 SYALGLGALVALGSYNKFNNNVYKD 367


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 120  SEIGNEMAKGPVEVTTPFRQMAFRLLFLTAFGIPVED 156
            +++   + K  V V TP     F+ + L+ FG   ED
Sbjct: 1386 AKLNEYLDKADVIVNTPIMDAHFKDVKLSDFGFSTED 1422


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 143 RLLFLTAFGIPVEDSDFNQKYIHSVDKLLSMLIYRFQNVLL 183
           RLL +  +  P + SD++ +  + +DK  SM  +  Q V++
Sbjct: 351 RLLVMRRYNTPSKRSDYDSRPQYQIDK-RSMGSHHGQRVMV 390


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,687
Number of Sequences: 429
Number of extensions: 5257
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 9
length of query: 458
length of database: 140,377
effective HSP length: 60
effective length of query: 398
effective length of database: 114,637
effective search space: 45625526
effective search space used: 45625526
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)