Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002306-TA|BGIBMGA002306-PA|undefined
(144 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual 27 1.5
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 27 1.5
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 27 1.5
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 26 2.6
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 3.4
SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr 3||... 25 4.5
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 25 6.0
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 25 6.0
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 6.0
>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 26.6 bits (56), Expect = 1.5
Identities = 12/53 (22%), Positives = 26/53 (49%)
Query: 2 SYGILVWGNAADVEMIFILQKRAIRAIYNMHSREFLREKLKEIKVLTMPAQYI 54
SY + V+G +D++ + ++ K R + LRE+ + + +P Y+
Sbjct: 88 SYRLGVYGPGSDIDTLVVVPKHVSRDNFFQDLEPMLREREEVTDLAAVPDAYV 140
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 26.6 bits (56), Expect = 1.5
Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 49 MPAQYIFENLMYVRKHIEELPKKSDIHNRNTRNKHKLVLPMSRLHKIRNSFGCLSVRLYN 108
+P Q ++ ++ +++ ++ +S+++ R TR +L M + L LYN
Sbjct: 152 LPLQTVYMQMVDIQESMDRCYFESEVNKRKTRLGARLEQVMRDVELEIYKDSPLET-LYN 210
Query: 109 KIPQDVQNLHIDRFKKTIKEHLYNK 133
+I + I R ++ H+YNK
Sbjct: 211 QIINYAETDEIRRLTESKLLHMYNK 235
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 26.6 bits (56), Expect = 1.5
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 75 HNRNTRNKHKLVLPMSRLHKIRNSFGCLSV----RLYNKIPQDVQNLHIDRFKKTIKEHL 130
H R+ R P L K S LSV R + K P +QNL+ R K + +
Sbjct: 451 HIRSQRQHKTHAAPSKELTKESLSNDQLSVKEKRRHHKKAPTLIQNLNSPRTPKIVGKMR 510
Query: 131 YN--KAYYKVNDY 141
YN K ++ NDY
Sbjct: 511 YNPTKHCWEGNDY 523
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 25.8 bits (54), Expect = 2.6
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 8 WGNAADVEMI---FILQKRAIRAIYNMHSREFLREKLK 42
W N +VE+I ++L + + + NM R+FLR+K K
Sbjct: 208 WSNR-EVEIINSLYLLTAKPVIYLVNMSERDFLRQKNK 244
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.4 bits (53), Expect = 3.4
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 74 IHNRNTRNKHKLVLPMSRLHKIRNSFGCLSVRLYNKIPQDVQNLHIDRFKKTIKEHL 130
++ + R K + P+S + NS G + + P+ + + +RFK T +E +
Sbjct: 213 LYLESLREKRRTYTPLSEISNGLNSNGVENSSITKSSPRSSSSSNNERFKDTSEESI 269
>SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr
3|||Manual
Length = 126
Score = 25.0 bits (52), Expect = 4.5
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 44 IKVLTMPAQYIFENLMYVRKHIEELPKKSDIHNRNTRNKHKLVLPMSRLHKIRNSFGCLS 103
+++L IFE + + KKS I +R + +L+LP L K + G S
Sbjct: 59 MRILNSFVNDIFERIATEASKLAAYNKKSTISSREIQTAVRLILP-GELAKHAVTEGTKS 117
Query: 104 VRLYNKIPQ 112
V Y+ Q
Sbjct: 118 VTKYSSSAQ 126
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 24.6 bits (51), Expect = 6.0
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 61 VRKHIEELPKKSDIHN-RNTRNKHKLVLPMSRLH 93
++ H ++L +K D N +N N H+ V+ M R H
Sbjct: 4 LKHHEQKLLRKVDFLNYKNDDNNHRDVMVMRRYH 37
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 24.6 bits (51), Expect = 6.0
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 70 KKSDIHNRNTRNKHKLVLPMSRLHKIRNSFGCLSVRLYNKIPQDVQNLHIDR 121
K++ H+ +N H +VLP + LH+ + + + I Q V N +R
Sbjct: 670 KEASPHSDVLKNLHFVVLPPTELHETKAGLQQIIIENGGLIHQGVGNFGKER 721
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 24.6 bits (51), Expect = 6.0
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 19 ILQKRAIRAIYNMHSREFLREKLKEIKVLTMPAQYIFENLMY 60
+L+K IRA+ + + F + E+ V A IF NL Y
Sbjct: 1348 LLEKGVIRAVARLCKQIFSLSPMFEVFVTQNYANSIFTNLTY 1389
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.324 0.138 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 693,068
Number of Sequences: 5004
Number of extensions: 28487
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 104
Number of HSP's gapped (non-prelim): 9
length of query: 144
length of database: 2,362,478
effective HSP length: 67
effective length of query: 77
effective length of database: 2,027,210
effective search space: 156095170
effective search space used: 156095170
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 50 (24.2 bits)
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