Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002306-TA|BGIBMGA002306-PA|undefined
(144 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0679 - 5048653-5051394 29 1.9
10_08_0361 + 17207657-17207701,17208850-17209773 28 2.6
02_01_0073 - 509377-509425,510200-510270,510420-510539,510684-51... 28 2.6
06_01_0446 - 3147007-3147111,3147215-3147367,3147445-3147497,314... 27 5.9
06_03_1511 - 30669292-30669401,30669894-30669930,30670012-306701... 27 7.9
04_03_0099 + 11185832-11185893,11186744-11186912,11186940-111870... 27 7.9
04_01_0409 - 5409018-5410268 27 7.9
03_05_0020 + 19873173-19873949 27 7.9
02_05_0449 - 29107310-29107377,29107732-29107777,29107860-291079... 27 7.9
>02_01_0679 - 5048653-5051394
Length = 913
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 108 NKIPQDVQNLHIDRFKKTIKEHLYNKAYYKVNDYLED 144
+KIP D+ +H + +KE L NK Y V D + D
Sbjct: 252 SKIPTDLDTMHHGKLNDELKEVLSNKKYLIVLDDVWD 288
>10_08_0361 + 17207657-17207701,17208850-17209773
Length = 322
Score = 28.3 bits (60), Expect = 2.6
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 58 LMYVRKHIEELPKKSDIHNRNTRNKHKLVLPMSRLHKIRNSFGCLSVRLYNK 109
LMY + +E+ S RN + H LV P +LH N G ++ L K
Sbjct: 129 LMYAGQQLEDNQLLSQCDLRNDQTFHVLVCPNDKLHVFINVRGEKTIGLETK 180
>02_01_0073 -
509377-509425,510200-510270,510420-510539,510684-510769,
510843-510915,510996-511718,513752-514081,514124-514210,
514494-515250,515336-515399,515477-515609,515702-515801,
515952-516088,516195-516341,516428-516478,517083-517148
Length = 997
Score = 28.3 bits (60), Expect = 2.6
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 32 HSREFLREKLKEIKVLTMPAQYIFENLMYV-RKHIEELPKKSDIHNRNTRNK--HKLVLP 88
H+ EF + +K ++ P I + Y+ +H +L ++ I K + +P
Sbjct: 851 HAEEFRHYNYETVKQVSHP---IHDQCFYLTNEHKRKLKEEHGIEPWTFEQKLGEAVFIP 907
Query: 89 MSRLHKIRNSFGCLSVRLYNKIPQDVQNL--HIDRFKKTIKEHLYNK 133
H++RN C+ V L P++VQ + F+ K H N+
Sbjct: 908 AGCPHQVRNLKSCIKVALDFVSPENVQECIRLTEEFRLLPKGHRVNE 954
>06_01_0446 -
3147007-3147111,3147215-3147367,3147445-3147497,
3147670-3147988,3148754-3148892,3149141-3149222,
3149711-3149789,3150135-3150314,3150811-3151070,
3151192-3151294,3151469-3151609,3151797-3151870,
3153536-3153635,3154108-3154167,3154381-3154428,
3154519-3154610,3155023-3155071,3155810-3155879,
3156408-3156505,3157288-3157347
Length = 754
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 12 ADVEMIFILQKRAIRAIYNMHSREFLREKLKEI 44
AD+E I + K A RA+Y++H + RE +K++
Sbjct: 113 ADMEFISMGMKVATRAVYSLH-KTSTREHIKKV 144
>06_03_1511 - 30669292-30669401,30669894-30669930,30670012-30670107,
30670186-30670281,30670679-30670828,30670956-30671100,
30671178-30671251,30671325-30671445,30671697-30671821,
30671898-30672047,30672249-30672324,30672496-30672557,
30672597-30672839,30673354-30673683,30673776-30673932,
30674008-30674139,30674219-30674277,30674734-30674798,
30674878-30675094,30675413-30675499,30675655-30675750,
30675938-30676003,30676096-30676287,30676380-30676532,
30676812-30677052,30677322-30677515,30678212-30678348,
30678474-30678480,30678708-30678830,30679370-30679427,
30680018-30680090,30680493-30681765
Length = 1714
Score = 26.6 bits (56), Expect = 7.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 21 QKRAIRAIYNMHSREFLREKLKEIKVLTMPAQYIFENLMY 60
+K+A A+ S E ++E LKE +LT+ + F +L +
Sbjct: 989 RKQASEALATQTSMEVVKEVLKEASILTIEEEQPFVDLSH 1028
>04_03_0099 +
11185832-11185893,11186744-11186912,11186940-11187075,
11188152-11188205,11188280-11188578
Length = 239
Score = 26.6 bits (56), Expect = 7.9
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 36 FLREKLKEIKVLTMPAQYI-FENLM----YVRKHIEELPKKSDIHNRNTRNKHK 84
FLR KEI+ + + Y F +L+ +V K IE++ KK +H N NK +
Sbjct: 33 FLRGLNKEIQDMLVCQSYSSFAHLLQLACHVEKPIEDVNKKQVVHEVNNCNKEE 86
>04_01_0409 - 5409018-5410268
Length = 416
Score = 26.6 bits (56), Expect = 7.9
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 67 ELPKKSDIHNRNTRNKHKLV----LPMSRLHKIRNSFGCLSVRLYNKIPQDVQNLHIDRF 122
E P+ +DIHN R HK + P S L IR + + KI I ++
Sbjct: 96 EKPRTNDIHNPTLRLMHKWIAITLFPRSNLRPIRGDELIIMFAMVRKIKISPVKCMIRQW 155
Query: 123 KKTIK 127
++IK
Sbjct: 156 LESIK 160
>03_05_0020 + 19873173-19873949
Length = 258
Score = 26.6 bits (56), Expect = 7.9
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 65 IEELPKKSDIHNRNTRNKHKLVLPMSRLHKIRNSFGCLSVRLYNKIPQDVQ-NLHIDRFK 123
IE + D +R+TRN +V+P + ++N + + L I Q + NL ++ K
Sbjct: 13 IERTKNRIDEISRDTRNNTNIVMPSTMSELLQNERNVVPIVLDTNILQACENNLGNEKEK 72
Query: 124 KTIKE 128
K +E
Sbjct: 73 KDEEE 77
>02_05_0449 -
29107310-29107377,29107732-29107777,29107860-29107934,
29108053-29108122,29108313-29108408,29108728-29108914,
29109001-29109169,29109614-29109646,29109731-29109841,
29110070-29111256,29112380-29112448,29114417-29114975,
29115455-29115589,29115714-29115896
Length = 995
Score = 26.6 bits (56), Expect = 7.9
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 9 GNAADVEMIFILQKRAIRAIYNMHSREFLREK--LKEIKVLTMPAQYIFENLMYVRKHIE 66
GN + + L ++ I N + ++ E+ LK I+VL + L + +H
Sbjct: 257 GNVYSMNKLVDLWEKKINKFLN---KIYITEEQLLKNIEVLAFVLPLALQ-LWMLEEHYT 312
Query: 67 ELPKKSDIHNRNTRN----KHK 84
L ++S HNR++RN KHK
Sbjct: 313 ALSERSSGHNRHSRNDSSTKHK 334
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.324 0.138 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,803,128
Number of Sequences: 37544
Number of extensions: 139533
Number of successful extensions: 523
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 519
Number of HSP's gapped (non-prelim): 10
length of query: 144
length of database: 14,793,348
effective HSP length: 75
effective length of query: 69
effective length of database: 11,977,548
effective search space: 826450812
effective search space used: 826450812
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)
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