Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002306-TA|BGIBMGA002306-PA|undefined
(144 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF045640-2|AAM81123.1| 185|Caenorhabditis elegans Hypothetical ... 29 1.7
Z93374-5|CAB07557.1| 935|Caenorhabditis elegans Hypothetical pr... 27 3.9
AF000194-1|AAK39376.4| 386|Caenorhabditis elegans Hypothetical ... 27 3.9
Z81030-1|CAB02703.1| 1204|Caenorhabditis elegans Hypothetical pr... 27 6.9
AF025457-4|AAB70966.1| 385|Caenorhabditis elegans Hypothetical ... 27 6.9
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 26 9.1
Z54271-5|CAA91035.2| 407|Caenorhabditis elegans Hypothetical pr... 26 9.1
U53150-9|AAA96129.1| 106|Caenorhabditis elegans Hypothetical pr... 26 9.1
AF292046-1|AAG41142.1| 407|Caenorhabditis elegans polynucleotid... 26 9.1
>AF045640-2|AAM81123.1| 185|Caenorhabditis elegans Hypothetical
protein C11D2.7 protein.
Length = 185
Score = 28.7 bits (61), Expect = 1.7
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 54 IFENLMYVRKHIEE-LPKKSDIHNRNTRNKHKLV---LPMSRLHKIRNSFGCLSVRLYNK 109
+ EN Y+ H+EE LPKK + ++ +L+ L + R K RN+ ++R +K
Sbjct: 29 LIENFPYLEPHLEEILPKKENFKVIKCKDHIELLADHLGVVRFVKTRNTDYIPTLRTLHK 88
Query: 110 IPQDVQNLHIDR 121
P + + +D+
Sbjct: 89 YPFILPHQQVDK 100
>Z93374-5|CAB07557.1| 935|Caenorhabditis elegans Hypothetical
protein C06C6.7 protein.
Length = 935
Score = 27.5 bits (58), Expect = 3.9
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 29 YNMHSREFLREKLKEIKVLTMPAQYIFENLMYVRKHIEELPKKSDIHNRNTRNKH-KLVL 87
Y+M + F +K + I+ LT A N + + I ++ K S + N KH KL+L
Sbjct: 382 YHMMRQVFDLQKHRGIR-LTQNAIDSISNTLETKCLIADMDK-SFLENMKQSAKHVKLLL 439
Query: 88 -PMSRLHKIRNSFGCLSVRLYNKIPQDVQNLHIDRFKKTIK 127
+ L IRN+F + +NK+ ++ + + ++
Sbjct: 440 RKVQALESIRNAFTSKVINDFNKLSTQTKSSDVSSIRTVLR 480
>AF000194-1|AAK39376.4| 386|Caenorhabditis elegans Hypothetical
protein ZC328.2 protein.
Length = 386
Score = 27.5 bits (58), Expect = 3.9
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 70 KKSDIHNRNTRNKHKLVLPMSRLHKIRNSFGCLSVRLYNKI-PQDVQNLH 118
++ D+ R+ +H+ + P S L RN CLS Y+K+ Q+++ H
Sbjct: 313 RRRDVLTRHMSTRHQAIAPPSILGTHRNVRRCLSDGDYHKMAAQELRQRH 362
>Z81030-1|CAB02703.1| 1204|Caenorhabditis elegans Hypothetical
protein C01G10.1 protein.
Length = 1204
Score = 26.6 bits (56), Expect = 6.9
Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 55 FENLM-YVRKHIEELPKKSDIHNRNTRNKHKLVLPMSRLHKIRNSFGCLSVRLYNKIPQD 113
F N M ++ ++++ + ++ N KL++ M ++R CLS + Q
Sbjct: 507 FHNFMTHLSQNLKNIKVITNKSLPNDTKIDKLLVEMLDTSQLRGISKCLS----QEFMQP 562
Query: 114 VQNLHIDRFKKTIKEHLYNKAYYKVNDYLED 144
++ L + T+++ NK K+N YL++
Sbjct: 563 LRVLEVIEAMITVRQFAGNKTVLKMNQYLDE 593
>AF025457-4|AAB70966.1| 385|Caenorhabditis elegans Hypothetical
protein C08E3.6 protein.
Length = 385
Score = 26.6 bits (56), Expect = 6.9
Identities = 10/48 (20%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 30 NMHSREFLREKLKEIK-VLTMPAQYIFENLMYVRKHIEELPKKSDIHN 76
++H F E +++ ++ A +++ + Y R +I+ L + D+H+
Sbjct: 299 DVHLATFTDEDAMKLRDMIDRSAHFVYAEIQYTRMNIDRLKRVFDVHS 346
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical protein
F15B9.4 protein.
Length = 1140
Score = 26.2 bits (55), Expect = 9.1
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 49 MPAQYIFENLMYVRKHIEELPKKSDIHNRNTRNKHKLVLPMSRLHK 94
M Q IFE L K + + K++ NR TR + LP S + +
Sbjct: 978 MTLQAIFETLEQSMKIVSDAVKQAATKNRLTRASSLVTLPTSSVSR 1023
>Z54271-5|CAA91035.2| 407|Caenorhabditis elegans Hypothetical
protein F21D5.5 protein.
Length = 407
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 106 LYNKIPQDVQNLHIDRFKKTI 126
LY+ IP D + LH D FK I
Sbjct: 81 LYDSIPSDFKKLHSDGFKIVI 101
>U53150-9|AAA96129.1| 106|Caenorhabditis elegans Hypothetical
protein F20A1.8 protein.
Length = 106
Score = 26.2 bits (55), Expect = 9.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 119 IDRFKKTIKEHLYNKAYYKVNDYLE 143
+DR+K EH+ K YY + ++ E
Sbjct: 27 VDRYKNERMEHVRGKRYYIITEHAE 51
>AF292046-1|AAG41142.1| 407|Caenorhabditis elegans polynucleotide
kinase 3' phosphataseprotein.
Length = 407
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 106 LYNKIPQDVQNLHIDRFKKTI 126
LY+ IP D + LH D FK I
Sbjct: 81 LYDSIPSDFKKLHSDGFKIVI 101
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.324 0.138 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,582,836
Number of Sequences: 27539
Number of extensions: 144504
Number of successful extensions: 526
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 521
Number of HSP's gapped (non-prelim): 9
length of query: 144
length of database: 12,573,161
effective HSP length: 75
effective length of query: 69
effective length of database: 10,507,736
effective search space: 725033784
effective search space used: 725033784
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 55 (26.2 bits)
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