GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002305-TA|BGIBMGA002305-PA|IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold, IPR001584|Integrase, catalytic
region
         (181 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       26   0.21 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   5.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   5.9  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 25.8 bits (54), Expect = 0.21
 Identities = 32/169 (18%), Positives = 69/169 (40%), Gaps = 13/169 (7%)

Query: 6   LSDEWKGALQVLGIHKTRTTSYHPQ---SDGMVESCNQTLERYL----AKVVENRTVTPF 58
           +S+ W+ +L+   I  T ++  HP+   S+ ++    +    Y     A  V + +    
Sbjct: 269 ISNTWQNSLRAADIQPTLSSIRHPESNPSERVMRELGRIFRAYCRENHASWVNHLSNIED 328

Query: 59  FANFGRELRL---PADLVIG-TPPDVSRSVTEYANDLRSKI--NEVHEDVRQSSQQASSR 112
             N+   +     P +++ G TPP+   +VT     +R  +   E+HE  R++ +  ++ 
Sbjct: 329 CLNYVPHISTGFSPYEILYGRTPPNPLDAVTSGLLPVRPPLTREEIHEKARENLKHHANL 388

Query: 113 MKSHYDREANQKGFSEGSLVWLHNPCFRSIVKSPKLQAKWDGPYRIMTK 161
            + +   E       +  L+           +  K    + GPY+I+ K
Sbjct: 389 RQKNQKGEVTVLEIEDWVLLKNKVTSDTRTHQFAKFMPLYSGPYKIIAK 437


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 57  PFFANFGRELRLPADLVIGTPP 78
           PFF + G  L  P    +G PP
Sbjct: 125 PFFCHNGDPLSQPPPAHMGIPP 146


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 57 PFFANFGRELRLPADLVIGTPP 78
          PFF + G  L  P    +G PP
Sbjct: 17 PFFCHNGDPLSQPPPAHMGIPP 38


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,641
Number of Sequences: 317
Number of extensions: 1559
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 181
length of database: 114,650
effective HSP length: 53
effective length of query: 128
effective length of database: 97,849
effective search space: 12524672
effective search space used: 12524672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)