Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002305-TA|BGIBMGA002305-PA|IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold, IPR001584|Integrase, catalytic
region
(181 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 38 0.001
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 38 0.001
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 38 0.001
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 38 0.001
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 38 0.001
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 38 0.001
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 38 0.001
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 38 0.001
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 38 0.001
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 38 0.001
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 38 0.001
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 0.70
SPAC4G9.11c |cmb1||cytosine-mismatch binding protein 1|Schizosac... 27 1.6
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar... 26 2.8
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 26 3.8
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe... 26 3.8
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 26 3.8
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 25 5.0
SPBC16E9.05 |erg6||delta-sterol C-methyltransferase |Schizosacch... 25 6.6
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac... 25 8.7
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 25 8.7
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 37.5 bits (83), Expect = 0.001
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 7 SDEWKGALQVLGIHKTRTTSYHPQSDGMVESCNQTLERYLAKVVENR---------TVTP 57
S WK + Y PQ+DG E NQT+E+ L V V
Sbjct: 1057 SQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQ 1116
Query: 58 FFAN--FGRELRLPADLVIGTPPDVS----RSVTEYANDLRSKINEVHEDVRQSSQQASS 111
+ N P ++V P +S S ++ ++ + +V + V++ +
Sbjct: 1117 SYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNI 1176
Query: 112 RMKSHYDREANQ-KGFSEGSLVWLHNPCFRSIVKSPKLQAKWDGPYRIMTKINDSRIE 168
+MK ++D + + + F G LV + + KS KL + GP+ ++ K + E
Sbjct: 1177 KMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYE 1234
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 37.5 bits (83), Expect = 0.001
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 7 SDEWKGALQVLGIHKTRTTSYHPQSDGMVESCNQTLERYLAKVVENR---------TVTP 57
S WK + Y PQ+DG E NQT+E+ L V V
Sbjct: 1057 SQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQ 1116
Query: 58 FFAN--FGRELRLPADLVIGTPPDVS----RSVTEYANDLRSKINEVHEDVRQSSQQASS 111
+ N P ++V P +S S ++ ++ + +V + V++ +
Sbjct: 1117 SYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNI 1176
Query: 112 RMKSHYDREANQ-KGFSEGSLVWLHNPCFRSIVKSPKLQAKWDGPYRIMTKINDSRIE 168
+MK ++D + + + F G LV + + KS KL + GP+ ++ K + E
Sbjct: 1177 KMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYE 1234
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 37.5 bits (83), Expect = 0.001
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 7 SDEWKGALQVLGIHKTRTTSYHPQSDGMVESCNQTLERYLAKVVENR---------TVTP 57
S WK + Y PQ+DG E NQT+E+ L V V
Sbjct: 1057 SQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQ 1116
Query: 58 FFAN--FGRELRLPADLVIGTPPDVS----RSVTEYANDLRSKINEVHEDVRQSSQQASS 111
+ N P ++V P +S S ++ ++ + +V + V++ +
Sbjct: 1117 SYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNI 1176
Query: 112 RMKSHYDREANQ-KGFSEGSLVWLHNPCFRSIVKSPKLQAKWDGPYRIMTKINDSRIE 168
+MK ++D + + + F G LV + + KS KL + GP+ ++ K + E
Sbjct: 1177 KMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYE 1234
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 37.5 bits (83), Expect = 0.001
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 7 SDEWKGALQVLGIHKTRTTSYHPQSDGMVESCNQTLERYLAKVVENR---------TVTP 57
S WK + Y PQ+DG E NQT+E+ L V V
Sbjct: 1057 SQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQ 1116
Query: 58 FFAN--FGRELRLPADLVIGTPPDVS----RSVTEYANDLRSKINEVHEDVRQSSQQASS 111
+ N P ++V P +S S ++ ++ + +V + V++ +
Sbjct: 1117 SYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNI 1176
Query: 112 RMKSHYDREANQ-KGFSEGSLVWLHNPCFRSIVKSPKLQAKWDGPYRIMTKINDSRIE 168
+MK ++D + + + F G LV + + KS KL + GP+ ++ K + E
Sbjct: 1177 KMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYE 1234
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 37.5 bits (83), Expect = 0.001
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 7 SDEWKGALQVLGIHKTRTTSYHPQSDGMVESCNQTLERYLAKVVENR---------TVTP 57
S WK + Y PQ+DG E NQT+E+ L V V
Sbjct: 1057 SQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQ 1116
Query: 58 FFAN--FGRELRLPADLVIGTPPDVS----RSVTEYANDLRSKINEVHEDVRQSSQQASS 111
+ N P ++V P +S S ++ ++ + +V + V++ +
Sbjct: 1117 SYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNI 1176
Query: 112 RMKSHYDREANQ-KGFSEGSLVWLHNPCFRSIVKSPKLQAKWDGPYRIMTKINDSRIE 168
+MK ++D + + + F G LV + + KS KL + GP+ ++ K + E
Sbjct: 1177 KMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYE 1234
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 37.5 bits (83), Expect = 0.001
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 7 SDEWKGALQVLGIHKTRTTSYHPQSDGMVESCNQTLERYLAKVVENR---------TVTP 57
S WK + Y PQ+DG E NQT+E+ L V V
Sbjct: 1057 SQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQ 1116
Query: 58 FFAN--FGRELRLPADLVIGTPPDVS----RSVTEYANDLRSKINEVHEDVRQSSQQASS 111
+ N P ++V P +S S ++ ++ + +V + V++ +
Sbjct: 1117 SYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNI 1176
Query: 112 RMKSHYDREANQ-KGFSEGSLVWLHNPCFRSIVKSPKLQAKWDGPYRIMTKINDSRIE 168
+MK ++D + + + F G LV + + KS KL + GP+ ++ K + E
Sbjct: 1177 KMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYE 1234
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 37.5 bits (83), Expect = 0.001
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 7 SDEWKGALQVLGIHKTRTTSYHPQSDGMVESCNQTLERYLAKVVENR---------TVTP 57
S WK + Y PQ+DG E NQT+E+ L V V
Sbjct: 1057 SQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQ 1116
Query: 58 FFAN--FGRELRLPADLVIGTPPDVS----RSVTEYANDLRSKINEVHEDVRQSSQQASS 111
+ N P ++V P +S S ++ ++ + +V + V++ +
Sbjct: 1117 SYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNI 1176
Query: 112 RMKSHYDREANQ-KGFSEGSLVWLHNPCFRSIVKSPKLQAKWDGPYRIMTKINDSRIE 168
+MK ++D + + + F G LV + + KS KL + GP+ ++ K + E
Sbjct: 1177 KMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYE 1234
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 37.5 bits (83), Expect = 0.001
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 7 SDEWKGALQVLGIHKTRTTSYHPQSDGMVESCNQTLERYLAKVVENR---------TVTP 57
S WK + Y PQ+DG E NQT+E+ L V V
Sbjct: 1057 SQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQ 1116
Query: 58 FFAN--FGRELRLPADLVIGTPPDVS----RSVTEYANDLRSKINEVHEDVRQSSQQASS 111
+ N P ++V P +S S ++ ++ + +V + V++ +
Sbjct: 1117 SYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNI 1176
Query: 112 RMKSHYDREANQ-KGFSEGSLVWLHNPCFRSIVKSPKLQAKWDGPYRIMTKINDSRIE 168
+MK ++D + + + F G LV + + KS KL + GP+ ++ K + E
Sbjct: 1177 KMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYE 1234
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 37.5 bits (83), Expect = 0.001
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 7 SDEWKGALQVLGIHKTRTTSYHPQSDGMVESCNQTLERYLAKVVENR---------TVTP 57
S WK + Y PQ+DG E NQT+E+ L V V
Sbjct: 1057 SQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQ 1116
Query: 58 FFAN--FGRELRLPADLVIGTPPDVS----RSVTEYANDLRSKINEVHEDVRQSSQQASS 111
+ N P ++V P +S S ++ ++ + +V + V++ +
Sbjct: 1117 SYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNI 1176
Query: 112 RMKSHYDREANQ-KGFSEGSLVWLHNPCFRSIVKSPKLQAKWDGPYRIMTKINDSRIE 168
+MK ++D + + + F G LV + + KS KL + GP+ ++ K + E
Sbjct: 1177 KMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYE 1234
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 37.5 bits (83), Expect = 0.001
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 7 SDEWKGALQVLGIHKTRTTSYHPQSDGMVESCNQTLERYLAKVVENR---------TVTP 57
S WK + Y PQ+DG E NQT+E+ L V V
Sbjct: 1057 SQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQ 1116
Query: 58 FFAN--FGRELRLPADLVIGTPPDVS----RSVTEYANDLRSKINEVHEDVRQSSQQASS 111
+ N P ++V P +S S ++ ++ + +V + V++ +
Sbjct: 1117 SYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNI 1176
Query: 112 RMKSHYDREANQ-KGFSEGSLVWLHNPCFRSIVKSPKLQAKWDGPYRIMTKINDSRIE 168
+MK ++D + + + F G LV + + KS KL + GP+ ++ K + E
Sbjct: 1177 KMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYE 1234
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 37.5 bits (83), Expect = 0.001
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 16/178 (8%)
Query: 7 SDEWKGALQVLGIHKTRTTSYHPQSDGMVESCNQTLERYLAKVVENR---------TVTP 57
S WK + Y PQ+DG E NQT+E+ L V V
Sbjct: 1057 SQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQ 1116
Query: 58 FFAN--FGRELRLPADLVIGTPPDVS----RSVTEYANDLRSKINEVHEDVRQSSQQASS 111
+ N P ++V P +S S ++ ++ + +V + V++ +
Sbjct: 1117 SYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNI 1176
Query: 112 RMKSHYDREANQ-KGFSEGSLVWLHNPCFRSIVKSPKLQAKWDGPYRIMTKINDSRIE 168
+MK ++D + + + F G LV + + KS KL + GP+ ++ K + E
Sbjct: 1177 KMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYE 1234
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.3 bits (60), Expect = 0.70
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 76 TPPDVSRSVTEYANDLR---SKINEVHEDVRQSSQQASSRMKSH 116
T ++ + E +NDLR SK++E +DVR+ + Q S ++ H
Sbjct: 833 TVDSMNSRILELSNDLRVANSKLSECSDDVRRLTLQNSFDLREH 876
>SPAC4G9.11c |cmb1||cytosine-mismatch binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 27.1 bits (57), Expect = 1.6
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 59 FANFGRELRLPADL--VIGTPPDVSRSVTEYANDLRSKINEVHEDVRQSSQQASSRMKSH 116
F F +ELR L +G P +S V E N ++ E+ ED ++ S +K
Sbjct: 154 FILFYKELRNNPKLRQELGIPEAISTLVEETQNASKAW-KELAEDKKKPFIDKSKALKEQ 212
Query: 117 YDREANQKGF 126
YD+ + GF
Sbjct: 213 YDKFMKEAGF 222
>SPAC1705.03c ||SPAC23H4.19|conserved fungal
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 2.8
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 79 DVSRSVTEYANDLRSKINEVHEDVRQSSQQASSRMKSHYDREANQKGFSEGSLV 132
D+S +V+ + S S ASS S ++ A GF+ G+LV
Sbjct: 357 DLSSTVSATSGSATSATGSATTTSYSSDSSASSSSSSSHESSAASNGFTAGALV 410
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 88 ANDLRSKINEVHEDVRQSSQQASSRMK 114
A+++ S N+ H DV +S Q+A RMK
Sbjct: 279 ASEMLSSKNKFHCDVCKSLQEAEKRMK 305
>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 377
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 15 QVLGIHKTRTTSYHPQSDG 33
QV+G+ TRTTS P+ DG
Sbjct: 200 QVVGLETTRTTSSIPKVDG 218
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.8 bits (54), Expect = 3.8
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 9/63 (14%)
Query: 77 PPDVSRSVTEYANDLRSKINEVH------EDVRQSSQQAS-SRMKSH--YDREANQKGFS 127
P SRS + YA+ ++S +N + VR++ QQ+S S +KS+ +D+ N G S
Sbjct: 264 PKFTSRSSSVYASPIKSSLNSLECNPSNLLSVRKNFQQSSDSYLKSNKSFDQLNNLVGLS 323
Query: 128 EGS 130
G+
Sbjct: 324 TGN 326
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 25.4 bits (53), Expect = 5.0
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 8 DEWKGALQVLGIHKTRTTSYHPQSDGMVESCNQTLE 43
+EW G + LG+ ++ P G SC + L+
Sbjct: 629 EEWMGDISELGLSSEHGSAIRPPLAGSWSSCAENLD 664
>SPBC16E9.05 |erg6||delta-sterol C-methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 25.0 bits (52), Expect = 6.6
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 123 QKGFSEGSLVWLHNPCFRSIVKSPKLQA 150
QKG EG L P F I K P+ A
Sbjct: 351 QKGLIEGGETHLFTPMFLMIAKKPETDA 378
>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 24.6 bits (51), Expect = 8.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 86 EYANDLRSKINEVHEDVRQSSQQASSRMKSHYD 118
E +DLRS +++ + D + S++ S K H D
Sbjct: 177 EERDDLRSSVDDDYYDYPRYSERKSLNSKRHVD 209
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 24.6 bits (51), Expect = 8.7
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 6 LSDEWKGALQVLGIHKTRTTSYHPQSDGMVESCNQTLERYLAKVVENRTVT--PFFANFG 63
+S + K LQV +T+T + S ++ +T E YL V + VT +F +
Sbjct: 93 ISKDGKPVLQVEYKGETKTFTPEEISSMVLMKMRETAEAYLGGKVTDAVVTVPAYFNDSQ 152
Query: 64 RELRLPADLVIG 75
R+ A L+ G
Sbjct: 153 RQATKDAGLIAG 164
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.132 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 823,597
Number of Sequences: 5004
Number of extensions: 31398
Number of successful extensions: 119
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 102
Number of HSP's gapped (non-prelim): 21
length of query: 181
length of database: 2,362,478
effective HSP length: 69
effective length of query: 112
effective length of database: 2,017,202
effective search space: 225926624
effective search space used: 225926624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)
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