GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002305-TA|BGIBMGA002305-PA|IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold, IPR001584|Integrase, catalytic
region
         (181 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    25   1.4  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           23   4.2  

>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 1   MLRTDLSDEWKGA-----LQVLGIHKTRTTSYHPQSDGMVESCNQTL 42
           ++R+D   E+K        +  GI    T  Y PQ +G+ E  N+TL
Sbjct: 139 VIRSDQGGEYKSKRLGQFYRAKGIVPQFTAGYSPQQNGVAERKNRTL 185


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 39   NQTLERYLAKVVENRTVTPFFANFGRELRLP 69
            N T  R +A++V + T +P F+   R+ + P
Sbjct: 1319 NSTPSRSVARIVTSFTDSPLFSRRNRQPKAP 1349


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,661
Number of Sequences: 2123
Number of extensions: 6775
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 3
length of query: 181
length of database: 516,269
effective HSP length: 60
effective length of query: 121
effective length of database: 388,889
effective search space: 47055569
effective search space used: 47055569
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)