GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002305-TA|BGIBMGA002305-PA|IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold, IPR001584|Integrase, catalytic
region
         (181 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC062749-1|AAH62749.1|  383|Homo sapiens CCDC73 protein protein.       30   4.0  
AK128159-1|BAC87304.1|  822|Homo sapiens protein ( Homo sapiens ...    30   4.0  
AK057704-1|BAB71549.1|  120|Homo sapiens protein ( Homo sapiens ...    30   4.0  
DQ996467-1|ABI97388.1|  655|Homo sapiens ATP-binding cassette, s...    29   7.0  
BC092408-1|AAH92408.1|  611|Homo sapiens ABCG2 protein protein.        29   7.0  
BC045609-1|AAH45609.1| 1208|Homo sapiens hypothetical protein FL...    29   7.0  
BC021281-1|AAH21281.1|  655|Homo sapiens ATP-binding cassette, s...    29   7.0  
AY333756-1|AAQ92942.1|  655|Homo sapiens ATP-binding cassette su...    29   7.0  
AY333755-1|AAQ92941.1|  655|Homo sapiens mutant ATP-binding cass...    29   7.0  
AY289766-1|AAP44087.1|  655|Homo sapiens ABC transporter protein.      29   7.0  
AY017168-1|AAG52982.1|  655|Homo sapiens ABC transporter ABCG2 p...    29   7.0  
AK131470-1|BAD18615.1|  458|Homo sapiens protein ( Homo sapiens ...    29   7.0  
AK023197-1|BAB14457.1|  766|Homo sapiens protein ( Homo sapiens ...    29   7.0  
AF463519-1|AAO14617.1|  655|Homo sapiens ATP-binding cassette pr...    29   7.0  
AF103796-1|AAD09188.1|  655|Homo sapiens placenta-specific ATP-b...    29   7.0  
AF098951-1|AAC97367.1|  655|Homo sapiens breast cancer resistanc...    29   7.0  
AC097484-1|AAY40902.1|  607|Homo sapiens unknown protein.              29   7.0  
AB056867-1|BAB39212.1|  655|Homo sapiens Breast Cancer Resistanc...    29   7.0  
AB051855-1|BAB46933.1|  655|Homo sapiens ATP-binding cassette su...    29   7.0  
AB051523-1|BAB21827.1| 1244|Homo sapiens KIAA1736 protein protein.     29   7.0  
AB040899-1|BAA95990.1|  505|Homo sapiens KIAA1466 protein protein.     29   9.3  

>BC062749-1|AAH62749.1|  383|Homo sapiens CCDC73 protein protein.
          Length = 383

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 87  YANDLRSKINEVHEDVRQSSQQASSRMKSHYDREANQKGFSE 128
           +A +L  +IN++  ++  S ++   +++ HY++  NQK F E
Sbjct: 254 HAEELNGEINKIKNEL-SSLKETHIKLQEHYNKLCNQKTFEE 294


>AK128159-1|BAC87304.1|  822|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46282 fis, clone TESTI4031066. ).
          Length = 822

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 87  YANDLRSKINEVHEDVRQSSQQASSRMKSHYDREANQKGFSE 128
           +A +L  +IN++  ++  S ++   +++ HY++  NQK F E
Sbjct: 93  HAEELNGEINKIKNEL-SSLKETHIKLQEHYNKLCNQKTFEE 133


>AK057704-1|BAB71549.1|  120|Homo sapiens protein ( Homo sapiens
           cDNA FLJ33142 fis, clone UTERU1000192. ).
          Length = 120

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 17/48 (35%), Positives = 25/48 (52%)

Query: 4   TDLSDEWKGALQVLGIHKTRTTSYHPQSDGMVESCNQTLERYLAKVVE 51
           T ++D  +   +VLGI      +Y PQS    E  NQT++  L KV +
Sbjct: 59  TFVADLVQKIAKVLGIIWKLHAAYRPQSSRKAEQMNQTIKNSLGKVCQ 106


>DQ996467-1|ABI97388.1|  655|Homo sapiens ATP-binding cassette,
           sub-family G (WHITE), member 2 protein.
          Length = 655

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 124 KGFSEGSLVWLHNPCFRSIVKSPKLQAKWDGPYRIMTKIN 163
           K F+EG+++  HN C+R  +KS  L  +      I++ IN
Sbjct: 29  KAFTEGAVLSFHNICYRVKLKSGFLPCRKPVEKEILSNIN 68


>BC092408-1|AAH92408.1|  611|Homo sapiens ABCG2 protein protein.
          Length = 611

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 124 KGFSEGSLVWLHNPCFRSIVKSPKLQAKWDGPYRIMTKIN 163
           K F+EG+++  HN C+R  +KS  L  +      I++ IN
Sbjct: 29  KAFTEGAVLSFHNICYRVKLKSGFLPCRKPVEKEILSNIN 68


>BC045609-1|AAH45609.1| 1208|Homo sapiens hypothetical protein
           FLJ20294 protein.
          Length = 1208

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 16/50 (32%), Positives = 24/50 (48%)

Query: 71  DLVIGTPPDVSRSVTEYANDLRSKINEVHEDVRQSSQQASSRMKSHYDRE 120
           DLVI  P  ++  V  Y + L   +  VH + R S +  +SR     DR+
Sbjct: 942 DLVICRPEALNSGVEYYWDQLNETVFTVHSNSRSSERPGTSRATWRTDRD 991


>BC021281-1|AAH21281.1|  655|Homo sapiens ATP-binding cassette,
           sub-family G (WHITE), member 2 protein.
          Length = 655

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 124 KGFSEGSLVWLHNPCFRSIVKSPKLQAKWDGPYRIMTKIN 163
           K F+EG+++  HN C+R  +KS  L  +      I++ IN
Sbjct: 29  KAFTEGAVLSFHNICYRVKLKSGFLPCRKPVEKEILSNIN 68


>AY333756-1|AAQ92942.1|  655|Homo sapiens ATP-binding cassette
           sub-family G (WHITE) member 2 protein.
          Length = 655

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 124 KGFSEGSLVWLHNPCFRSIVKSPKLQAKWDGPYRIMTKIN 163
           K F+EG+++  HN C+R  +KS  L  +      I++ IN
Sbjct: 29  KAFTEGAVLSFHNICYRVKLKSGFLPCRKPVEKEILSNIN 68


>AY333755-1|AAQ92941.1|  655|Homo sapiens mutant ATP-binding
           cassette sub-family G (WHITE) member 2 protein.
          Length = 655

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 124 KGFSEGSLVWLHNPCFRSIVKSPKLQAKWDGPYRIMTKIN 163
           K F+EG+++  HN C+R  +KS  L  +      I++ IN
Sbjct: 29  KAFTEGAVLSFHNICYRVKLKSGFLPCRKPVEKEILSNIN 68


>AY289766-1|AAP44087.1|  655|Homo sapiens ABC transporter protein.
          Length = 655

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 124 KGFSEGSLVWLHNPCFRSIVKSPKLQAKWDGPYRIMTKIN 163
           K F+EG+++  HN C+R  +KS  L  +      I++ IN
Sbjct: 29  KAFTEGAVLSFHNICYRVKLKSGFLPCRKPVEKEILSNIN 68


>AY017168-1|AAG52982.1|  655|Homo sapiens ABC transporter ABCG2
           protein.
          Length = 655

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 124 KGFSEGSLVWLHNPCFRSIVKSPKLQAKWDGPYRIMTKIN 163
           K F+EG+++  HN C+R  +KS  L  +      I++ IN
Sbjct: 29  KAFTEGAVLSFHNICYRVKLKSGFLPCRKPVEKEILSNIN 68


>AK131470-1|BAD18615.1|  458|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16638 fis, clone TESTI4025865. ).
          Length = 458

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 87  YANDLRSKINEVHEDVRQSSQQASSRMKSHYDREANQKGFSE 128
           +A +L  +IN++  ++  S ++    ++ HY++  NQK F E
Sbjct: 350 HAEELNGEINKIKNEL-SSLKETHIELQEHYNKLCNQKTFEE 390


>AK023197-1|BAB14457.1|  766|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13135 fis, clone NT2RP3003078, highly similar to
           Rattus norvegicus mRNA for ischemia related factor
           NYW-1. ).
          Length = 766

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 16/50 (32%), Positives = 24/50 (48%)

Query: 71  DLVIGTPPDVSRSVTEYANDLRSKINEVHEDVRQSSQQASSRMKSHYDRE 120
           DLVI  P  ++  V  Y + L   +  VH + R S +  +SR     DR+
Sbjct: 500 DLVICRPEALNSGVEYYWDQLNETVFTVHSNSRSSERPGTSRATWRTDRD 549


>AF463519-1|AAO14617.1|  655|Homo sapiens ATP-binding cassette
           protein ABCG2 protein.
          Length = 655

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 124 KGFSEGSLVWLHNPCFRSIVKSPKLQAKWDGPYRIMTKIN 163
           K F+EG+++  HN C+R  +KS  L  +      I++ IN
Sbjct: 29  KAFTEGAVLSFHNICYRVKLKSGFLPCRKPVEKEILSNIN 68


>AF103796-1|AAD09188.1|  655|Homo sapiens placenta-specific
           ATP-binding cassette transporter protein.
          Length = 655

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 124 KGFSEGSLVWLHNPCFRSIVKSPKLQAKWDGPYRIMTKIN 163
           K F+EG+++  HN C+R  +KS  L  +      I++ IN
Sbjct: 29  KAFTEGAVLSFHNICYRVKLKSGFLPCRKPVEKEILSNIN 68


>AF098951-1|AAC97367.1|  655|Homo sapiens breast cancer resistance
           protein protein.
          Length = 655

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 124 KGFSEGSLVWLHNPCFRSIVKSPKLQAKWDGPYRIMTKIN 163
           K F+EG+++  HN C+R  +KS  L  +      I++ IN
Sbjct: 29  KAFTEGAVLSFHNICYRVKLKSGFLPCRKPVEKEILSNIN 68


>AC097484-1|AAY40902.1|  607|Homo sapiens unknown protein.
          Length = 607

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 124 KGFSEGSLVWLHNPCFRSIVKSPKLQAKWDGPYRIMTKIN 163
           K F+EG+++  HN C+R  +KS  L  +      I++ IN
Sbjct: 29  KAFTEGAVLSFHNICYRVKLKSGFLPCRKPVEKEILSNIN 68


>AB056867-1|BAB39212.1|  655|Homo sapiens Breast Cancer Resistance
           Protein protein.
          Length = 655

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 124 KGFSEGSLVWLHNPCFRSIVKSPKLQAKWDGPYRIMTKIN 163
           K F+EG+++  HN C+R  +KS  L  +      I++ IN
Sbjct: 29  KAFTEGAVLSFHNICYRVKLKSGFLPCRKPVEKEILSNIN 68


>AB051855-1|BAB46933.1|  655|Homo sapiens ATP-binding cassette
           superfamily G (White) member 2 protein.
          Length = 655

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 124 KGFSEGSLVWLHNPCFRSIVKSPKLQAKWDGPYRIMTKIN 163
           K F+EG+++  HN C+R  +KS  L  +      I++ IN
Sbjct: 29  KAFTEGAVLSFHNICYRVKLKSGFLPCRKPVEKEILSNIN 68


>AB051523-1|BAB21827.1| 1244|Homo sapiens KIAA1736 protein protein.
          Length = 1244

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 16/50 (32%), Positives = 24/50 (48%)

Query: 71   DLVIGTPPDVSRSVTEYANDLRSKINEVHEDVRQSSQQASSRMKSHYDRE 120
            DLVI  P  ++  V  Y + L   +  VH + R S +  +SR     DR+
Sbjct: 978  DLVICRPEALNSGVEYYWDQLNETVFTVHSNSRSSERPGTSRATWRTDRD 1027


>AB040899-1|BAA95990.1|  505|Homo sapiens KIAA1466 protein protein.
          Length = 505

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)

Query: 27  YHPQSDGMVESCNQTLERYL 46
           YHPQS G V+  NQTL+  L
Sbjct: 368 YHPQSSGKVQWMNQTLKHLL 387


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.318    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,339,535
Number of Sequences: 224733
Number of extensions: 906505
Number of successful extensions: 2363
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2345
Number of HSP's gapped (non-prelim): 21
length of query: 181
length of database: 73,234,838
effective HSP length: 85
effective length of query: 96
effective length of database: 54,132,533
effective search space: 5196723168
effective search space used: 5196723168
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)