GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002305-TA|BGIBMGA002305-PA|IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold, IPR001584|Integrase, catalytic
region
         (181 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    33   0.001
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   3.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   5.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   5.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   9.3  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 33.5 bits (73), Expect = 0.001
 Identities = 16/67 (23%), Positives = 33/67 (49%)

Query: 23  RTTSYHPQSDGMVESCNQTLERYLAKVVENRTVTPFFANFGRELRLPADLVIGTPPDVSR 82
           R  S H   D  +E+ N+TL    + + +N     F   F ++++   D+++  P + ++
Sbjct: 656 RPISCHTTPDSFIEAPNKTLPSLPSTLTKNSKQGLFSKLFAKKVKKDKDIILNVPKESTQ 715

Query: 83  SVTEYAN 89
           S+T   N
Sbjct: 716 SLTTTGN 722



 Score = 22.6 bits (46), Expect = 2.3
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 59  FANFGRELRLPADLVIGTPPDVSRSVTEY-ANDLRSK 94
           +++FG+ L     L     P   R++ EY  NDL +K
Sbjct: 346 YSSFGKILATEPTLFSNVTPKFPRNIDEYNNNDLDTK 382


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 13  ALQVLGIHKTRTTSYHPQS 31
           AL  + IH  RT  +HP S
Sbjct: 379 ALSPVDIHDDRTLFFHPMS 397


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 11  KGALQVLGIHKTRTTSYHPQSDGMVESC 38
           K AL ++GI   R  S+  +   ++E C
Sbjct: 811 KKALMIVGIRPERLPSFDDECWRLMEQC 838


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 11  KGALQVLGIHKTRTTSYHPQSDGMVESC 38
           K AL ++GI   R  S+  +   ++E C
Sbjct: 849 KKALMIVGIRPERLPSFDDECWRLMEQC 876


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 139 FRSIVKSPKLQAKWD 153
           FR++VK  K+   WD
Sbjct: 393 FRNLVKGTKIDNWWD 407


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,007
Number of Sequences: 429
Number of extensions: 1915
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 181
length of database: 140,377
effective HSP length: 54
effective length of query: 127
effective length of database: 117,211
effective search space: 14885797
effective search space used: 14885797
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)