GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002304-TA|BGIBMGA002304-PA|IPR007009|SHQ1 protein
         (434 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   9.7  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    22   9.7  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    22   9.7  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 64  LAPRDIPDVNPNLVEMLEEDG-ITLEN 89
           ++P D  D  PN  ++  EDG +T+ N
Sbjct: 738 VSPGDYKDFKPNNPDIKVEDGTLTINN 764


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 226 TTLNESTVESSWTINKLSSTLSW-FCTFLDTRHVLIACYRRALTYPIFRNYELCNKVKND 284
           T + +   +   TI+  +    W F  F     +L+  Y   +   I    + C +V+++
Sbjct: 258 TVVEKECYKMKVTIDAFNDIFGWSFLLFTLYSSLLLLDYVSCVVALIILILQ-CGRVRSE 316

Query: 285 LVSLLRKGKKLVIK 298
           +V +L   KK+ ++
Sbjct: 317 VVKILNVLKKIALR 330


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 226 TTLNESTVESSWTINKLSSTLSW-FCTFLDTRHVLIACYRRALTYPIFRNYELCNKVKND 284
           T + +   +   TI+  +    W F  F     +L+  Y   +   I    + C +V+++
Sbjct: 184 TVVEKECYKMKVTIDAFNDIFGWSFLLFTLYSSLLLLDYVSCVVALIILILQ-CGRVRSE 242

Query: 285 LVSLLRKGKKLVIK 298
           +V +L   KK+ ++
Sbjct: 243 VVKILNVLKKIALR 256


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.136    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,871
Number of Sequences: 317
Number of extensions: 4043
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 3
length of query: 434
length of database: 114,650
effective HSP length: 59
effective length of query: 375
effective length of database: 95,947
effective search space: 35980125
effective search space used: 35980125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)