Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002304-TA|BGIBMGA002304-PA|IPR007009|SHQ1 protein
(434 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ... 192 1e-49
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 31 0.32
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 30 0.73
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 29 1.7
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 28 2.2
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 28 2.2
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 27 5.1
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 27 5.1
SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual 27 5.1
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 27 5.1
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb... 26 9.0
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 26 9.0
SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr ... 26 9.0
SPAC664.08c |||traub transciption factor family protein |Schizos... 26 9.0
>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 451
Score = 192 bits (467), Expect = 1e-49
Identities = 119/379 (31%), Positives = 196/379 (51%), Gaps = 45/379 (11%)
Query: 9 FVSSPYFLRLRLPGRIVDDDRAKGSYTCDSGDFNLTFEKETAGEHFENLDMITNLLAPRD 68
F +PYFL+L LPG ++DDDRA SY SG ++ F KET GE F +LD++T LL ++
Sbjct: 40 FCIAPYFLKLELPGNVLDDDRANASYDISSGFVHIKFPKETPGEVFPDLDLLTTLLVNQN 99
Query: 69 IPDVNPNLVEMLEE--DGITLENDSDSENLE-------------KFTYGFANKISNE--- 110
V L+E +E+ T +N S E E F +G ++ +E
Sbjct: 100 KEPVKKPLIEEVEDTPSPSTSQNASKDEEKEVKIDWQNIHFDDPDFDWGLLQRLDDEKMQ 159
Query: 111 FCS-----IGNEFPQIFELKA-----------PENVAVDERNSMRMKHENDKFSSDHYLA 154
+ S N++ + + A PE R+ +R++ E++KF ++HY+A
Sbjct: 160 YTSTSQYGFNNQYSGLLKYNALVGNEINQIPEPERTPPSTRSEIRVQLEDEKFDAEHYMA 219
Query: 155 DFFD----DELL---APYLSSTSYWDKGDFKNEVEFTDEEVAILKELPNKHYLLSKEEYR 207
DF+D DE+L Y+ +G +EFT EE L +LP + YL+ + +
Sbjct: 220 DFYDREMIDEILHYIPDYIGEFLLVQQGKSDRLLEFTSEEKEALAKLPKRSYLI--DNPK 277
Query: 208 EIMLGLIDILFGYCYDKRTTLNESTVESSWTINKLSSTLSWFCT-FLDTRHVLIACYRRA 266
+ L L+ ++F Y YD RTTL + T+ES W I LSST+S T FL + + IAC RR+
Sbjct: 278 NVYLCLVPLIFAYAYDNRTTLGDPTIESCWNIGTLSSTISCLDTNFLAIKDIFIACIRRS 337
Query: 267 LTYPIFRNYELCNKVKNDLVSLLRKGKKLVIKCMIEVHQMFNTSNDARYILNQLYIKDYL 326
L YP++RN++L D ++L GK+ +++ ++ + +F +D YI N + + DY
Sbjct: 338 LAYPLYRNWDLALTCWKDTHAILSLGKRWILRVLLRIRNLFE-HHDVYYIYNAIVLNDYA 396
Query: 327 VFLQKCRNEEIMEICNNIA 345
++Q + + + ++
Sbjct: 397 YWIQTANDNVLAALAYQVS 415
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 31.1 bits (67), Expect = 0.32
Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 7/133 (5%)
Query: 66 PRDIPDVNPNLVEMLEEDGITLENDSDSENLEKFTYGFANKISNEFCSIGNEFPQIFELK 125
P+ + +P + G + E+DS S+N +K +F G + EL+
Sbjct: 29 PKKVDSFSPKKKKNTTSSGSS-ESDSMSQNDKKKDSSLNESEDEDFAGFGESASENDELE 87
Query: 126 APENVAVDERNSMRMKHENDKFSSDHYLADFFDDELLAPY----LSSTSYWDKGDFKNEV 181
+ E+ A ++ S K N K S + + + P+ L + S WDK K +
Sbjct: 88 SAESEAENDEESSSQK-SNSKESHAQRKKLQKERKAMKPFADTSLKAKSLWDKLRQKTSI 146
Query: 182 EFTDEEVAILKEL 194
+ +E I+ EL
Sbjct: 147 K-AEERKTIIAEL 158
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 29.9 bits (64), Expect = 0.73
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 241 KLSSTLSWFCTFLDTRHVLIACYRRALTYPIFRNYELCNKVKNDLVSLLRKG 292
K+ + L C L + CY R L++ NY K+ DL L+RKG
Sbjct: 233 KIGTPLEVLCKGLPEEFITYMCYTRQLSFTEKPNYAYLRKLFRDL--LIRKG 282
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 28.7 bits (61), Expect = 1.7
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 47 KETAGEHFENLDMITNLLAPRDIPDVNPNLVEMLEED 83
+ETA E F++L I L R + DV P L+++LE +
Sbjct: 2003 RETAAEAFDSLQSI---LGDRAVDDVLPQLLKLLESE 2036
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 28.3 bits (60), Expect = 2.2
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 80 LEEDGITLENDSDSENLEKFTYGFANKISNEFCSIGNEFPQIFELKAPENV 130
L E+GITLE E L + N++SN+ G +F +L P V
Sbjct: 2265 LNEEGITLEERQKPEILNQRAITVLNRVSNKL--TGRDFKPQQQLDVPSQV 2313
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 28.3 bits (60), Expect = 2.2
Identities = 29/138 (21%), Positives = 59/138 (42%), Gaps = 6/138 (4%)
Query: 193 ELPNKHYLLSKEEYREIMLGLIDILFGYCYDKRTTLNESTVESSWTINKLSSTLSWFCTF 252
+LPN L EE+ ++L IL+ D ++ + +S + +++ +S+ T
Sbjct: 868 QLPNISQLDVIEEHNVLLLLAEKILYELPLDALDSVEQINSKS---LRRVTGHVSFVKTG 924
Query: 253 LDTRHVLIACYRRALTYPIFRNYELCNKVKNDLVSLLRK--GKKLVIKCMIEVHQMFNTS 310
+ +L+ + + R YE +KN L+K G + +K EV QM +
Sbjct: 925 FCMQRILVCAVKSTVLNTTLRIYEADRALKNKKTQSLKKPFGNQATLKIFTEV-QMPMEA 983
Query: 311 NDARYILNQLYIKDYLVF 328
++ +L + + F
Sbjct: 984 LSVHFLKTKLCVGSFKGF 1001
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 71 DVNPNLVEMLEEDGITLENDSDSENLEKFTYGFANKISNE 110
+ N LV+ E+DG+T E+ D + G ++ IS+E
Sbjct: 316 EYNGELVDPDEDDGLTAEDREDMIKQYRVALGISDDISDE 355
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 27.1 bits (57), Expect = 5.1
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 48 ETAGEHFENLDMITNLLAPRDIPDVNPNLVEMLEEDGITLENDSDSENLEK 98
ET E F +L + + P PDV P+ E +++ +D+ ++++EK
Sbjct: 874 ETVLEKFNDLKIENKV--PETAPDVVPSSYPPAAESNVSVSSDTSTKDVEK 922
>SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 27.1 bits (57), Expect = 5.1
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 8/99 (8%)
Query: 66 PRDIPDVNPNLVE---MLEEDGITLENDSDSENLEKFTYGFANKISNEFCSIGNEFPQ-- 120
P ++PDV E L E+ I ++N E+ G A S CS+ E
Sbjct: 58 PDEVPDVKITFSEPHPWLGEEEIERLKQVVAQNAEE-CLGMAMIFS--LCSVAKEETNAI 114
Query: 121 IFELKAPENVAVDERNSMRMKHENDKFSSDHYLADFFDD 159
+ E E A++ER+ + EN KF + F +
Sbjct: 115 LIEQSQRETQAIEERHRKEAEQENKKFHGTPVTVESFTE 153
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 27.1 bits (57), Expect = 5.1
Identities = 17/67 (25%), Positives = 28/67 (41%)
Query: 281 VKNDLVSLLRKGKKLVIKCMIEVHQMFNTSNDARYILNQLYIKDYLVFLQKCRNEEIMEI 340
VK +S + K VIK I++ + + N +Y + + L+ C N + I
Sbjct: 37 VKKVKLSKMLKSDLSVIKMEIDLLKNLDHPNIVKYRGSYQTNDSLCIILEYCENGSLRSI 96
Query: 341 CNNIANI 347
C N I
Sbjct: 97 CKNFGKI 103
>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 120 QIFELKAPENVAVDERNSMRMKHENDKFS 148
+IF+LK PEN N + ENDK S
Sbjct: 93 RIFDLKHPENDLWTSTNMDQFSFENDKTS 121
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 70 PDVNPNLVEMLEEDGITLENDSDSENLEKFTYGFANKISNEFCSIGNEFPQIFELKAPEN 129
P NP L+E L L DS F F N + + P + +L P N
Sbjct: 237 PQFNP-LIEHLRRSNSPLNPSHDSAGASTFNTYFPNSTYQNILNSLDNNPAVLDLNGPPN 295
>SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 324
Score = 26.2 bits (55), Expect = 9.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 182 EFTDEEVAILKELPNKHYLLSKEEYREIML 211
EFTDEEVA EL + L E + E +L
Sbjct: 70 EFTDEEVATRIELAAAYRLFGLEHWNENIL 99
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 26.2 bits (55), Expect = 9.0
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 81 EEDGITLENDSDSENLEKFTYGFANKISNE 110
EED END+ SE+ E F+ A+ IS E
Sbjct: 95 EEDSEEDENDAVSEDHENFSSSEASSISEE 124
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.136 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,861,170
Number of Sequences: 5004
Number of extensions: 84217
Number of successful extensions: 277
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 266
Number of HSP's gapped (non-prelim): 16
length of query: 434
length of database: 2,362,478
effective HSP length: 75
effective length of query: 359
effective length of database: 1,987,178
effective search space: 713396902
effective search space used: 713396902
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
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