Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002304-TA|BGIBMGA002304-PA|IPR007009|SHQ1 protein
(434 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0146 - 31976538-31978643,31978653-31978751 34 0.26
03_01_0248 - 1932992-1933423,1933440-1933489,1933558-1933606,193... 31 1.8
01_03_0271 + 14454681-14456949,14457222-14457476,14458800-144588... 31 2.4
02_01_0579 - 4293528-4294117,4294561-4294762,4296145-4296348,429... 30 4.2
11_01_0479 - 3695245-3696588,3696705-3696965 29 5.5
03_05_0527 + 25220375-25221425,25221513-25222182,25222347-252224... 29 5.5
03_06_0195 + 32256771-32258792 29 9.6
>03_06_0146 - 31976538-31978643,31978653-31978751
Length = 734
Score = 33.9 bits (74), Expect = 0.26
Identities = 31/163 (19%), Positives = 74/163 (45%), Gaps = 7/163 (4%)
Query: 26 DDDRAKGSYTCDSGDFNLTFEKETAGEHFENLDMITNLLAPRDIPDVNPNLVEMLEEDGI 85
+DD DS ++ + ++E+ E + D+ ++ + D + E ++++ I
Sbjct: 192 EDDTGSSDLETDSDEYTESTDEESDYEEEDTTDLESDSDEDTESTDEESDYEEEIDDEEI 251
Query: 86 TLENDSDSENLEKFTYGFANKISNEFCSIGNEFPQIFELKAPENVAVDERNSMRMKHEND 145
E+ + NL+ GFA+ + + + + + +L ++ ++D+ S E D
Sbjct: 252 DDESVEEDINLDDELMGFASGLFGDDDTESSHDEE--DLDDDDDESLDDDGS-ECFDEED 308
Query: 146 KFSSDHYLADFFDDELLAPYLSSTSYWDKGDFKNEVEFTDEEV 188
+++ + FDDE Y+ + S ++ E ++DEE+
Sbjct: 309 IICAENLDDEIFDDE----YVDTGSSDEEESDDEEDSYSDEEI 347
Score = 29.1 bits (62), Expect = 7.3
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 79 MLEEDGITLENDSDSENLEKFTYGFANKISNEFCSIGNEFPQIFELKAP---ENVAVDER 135
+ EE+ ++ E D E E+F G + I E + G++F + ++ A +N E
Sbjct: 431 LYEEESVSDEQSDDEEEPEEFAGGGYDDIDYESLN-GDDFEEYLQVLADGGIDNENFGEE 489
Query: 136 NSMRMKHENDKFS--SDHYLADFFDDELLAPYLSSTS 170
S+ D F SD +L F+ D L S+S
Sbjct: 490 ESVLDDEVMDFFHGLSDEFLDFFYGDTLYDDETESSS 526
>03_01_0248 -
1932992-1933423,1933440-1933489,1933558-1933606,
1933688-1933840
Length = 227
Score = 31.1 bits (67), Expect = 1.8
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 178 KNEVEFTDE-EVAILKELPNKHYLLSKEEYREIMLG 212
KNE DE +A L LPN HY++S E R++ G
Sbjct: 160 KNEYLAGDEFTLADLSHLPNSHYIVSSERGRKLFTG 195
>01_03_0271 +
14454681-14456949,14457222-14457476,14458800-14458864,
14459053-14459171,14459270-14459324
Length = 920
Score = 30.7 bits (66), Expect = 2.4
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 273 RNYELCNKVKNDLVSLLRKGKKLVIKCMIEVHQMFNTSNDARYILNQLYIKDYLVF 328
+N L V D + L G K V +I ++ F+ +ND+R + ++ KD + +
Sbjct: 160 KNLYLGKGVHADSLKLALSGNKFVGSSLIGLYSKFSKTNDSRGVFEEIINKDIVAY 215
>02_01_0579 -
4293528-4294117,4294561-4294762,4296145-4296348,
4296425-4296585,4296665-4297158,4297526-4297584,
4297766-4297841,4298511-4298552,4298757-4298860,
4299071-4299280
Length = 713
Score = 29.9 bits (64), Expect = 4.2
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
Query: 39 GDFNLTFEKETAGEHFENLDMITNLLAPRDI--PDVNPNLVEMLEEDG-ITLENDSDSEN 95
GDFN E+ +GE FE+ ++ R + DV L E + G +T ++S
Sbjct: 234 GDFNNEDEEGWSGEEFES-HVVKEREGKRPLLTGDVQVTLKEGVGTVGELTFTDNSSWIR 292
Query: 96 LEKFTYGFANKISNEFCSIGNEFPQIFELKAPENVAVDERNSMRMKH 142
KF G KIS+ FC E +I E K + D R + KH
Sbjct: 293 SRKFRLGL--KISSGFC----EGIRIREAKTEAFMVKDHRGELYKKH 333
>11_01_0479 - 3695245-3696588,3696705-3696965
Length = 534
Score = 29.5 bits (63), Expect = 5.5
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 142 HENDKFSSDHYLADFFDDELLAPYLSSTSYWDKGDFKNEVEFTDEEV-AILKELPN 196
+ N K++S H +D ++ YL +S+ +EV+ +DEE+ A L+E+P+
Sbjct: 418 NSNGKYTS-HNATTSINDLIVTNYLPQSSHKGLKVVSSEVQVSDEEIFAALEEIPD 472
>03_05_0527 +
25220375-25221425,25221513-25222182,25222347-25222440,
25222688-25222870
Length = 665
Score = 29.5 bits (63), Expect = 5.5
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 91 SDSENLEKFTYGFANKISNEFCSIGNEFPQIFELKAPENVAVDERNSMRMKHENDKFSSD 150
+D+E EKF G ++++N+ I ++ +L D+RN M MK + +F S+
Sbjct: 217 TDAEKQEKFLAGLDDELTNQL--ISGDYADFEKLVDKAIRQEDQRNKMDMKRKAAQFRSN 274
>03_06_0195 + 32256771-32258792
Length = 673
Score = 28.7 bits (61), Expect = 9.6
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 79 MLEEDGITLENDSDSENLEKFTYGFANKISNEFCSIGNEFPQIFELKAP---ENVAVDER 135
+ EE+ ++ E D E E+F G + I E + G++F + ++ A +N + E
Sbjct: 372 LYEEESVSDEQSDDEEEPEEFAGGGYDGIDYESLN-GDDFEEYLQVLADGGIDNESFGEE 430
Query: 136 NSMRMKHENDKFS--SDHYLADFFDDELLAPYLSSTS 170
S+ D F +D +L DFF + L Y + +S
Sbjct: 431 ESVLDDEVLDFFHGLNDEFL-DFFYGDTLYDYETESS 466
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.136 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,462,368
Number of Sequences: 37544
Number of extensions: 435209
Number of successful extensions: 1001
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 998
Number of HSP's gapped (non-prelim): 9
length of query: 434
length of database: 14,793,348
effective HSP length: 84
effective length of query: 350
effective length of database: 11,639,652
effective search space: 4073878200
effective search space used: 4073878200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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