Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002304-TA|BGIBMGA002304-PA|IPR007009|SHQ1 protein
(434 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125455-2|AAP13747.2| 431|Caenorhabditis elegans Hypothetical ... 180 2e-45
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 34 0.23
AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical ... 31 1.2
Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical pr... 31 2.1
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein. 31 2.1
Z93394-3|CAD59167.1| 228|Caenorhabditis elegans Hypothetical pr... 30 2.8
Z78065-5|CAB01515.1| 954|Caenorhabditis elegans Hypothetical pr... 30 2.8
Z83120-5|CAB05588.1| 1467|Caenorhabditis elegans Hypothetical pr... 30 3.7
Z68106-8|CAA92125.2| 558|Caenorhabditis elegans Hypothetical pr... 30 3.7
Z49153-3|CAD30426.1| 558|Caenorhabditis elegans Hypothetical pr... 30 3.7
AF022982-5|AAB69936.2| 799|Caenorhabditis elegans Hypothetical ... 30 3.7
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p... 29 6.4
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr... 29 6.4
Z81047-12|CAB60283.1| 322|Caenorhabditis elegans Hypothetical p... 29 6.4
Z81037-1|CAB02745.1| 819|Caenorhabditis elegans Hypothetical pr... 29 6.4
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch... 29 6.4
AF100672-1|AAC68997.2| 334|Caenorhabditis elegans Hypothetical ... 29 6.4
Z82057-2|CAD89759.1| 561|Caenorhabditis elegans Hypothetical pr... 29 8.5
>AF125455-2|AAP13747.2| 431|Caenorhabditis elegans Hypothetical
protein Y48A5A.1 protein.
Length = 431
Score = 180 bits (437), Expect = 2e-45
Identities = 123/367 (33%), Positives = 182/367 (49%), Gaps = 34/367 (9%)
Query: 7 FLFVSSPYFLRLRLPGRIVDDDRAKGS--YTCDSGDFNLTFEKETAGEHFENLDMITNLL 64
F+F PYFLRL + + GS + D G+F++ K EHF NLDMIT LL
Sbjct: 38 FVFTCPPYFLRLHFKQMVEEYGSGNGSVEWKSDEGEFHIKVPKMHKKEHFSNLDMITELL 97
Query: 65 APRDI---PDVNPNLVEML------EEDGITL----------ENDSDSENLEKFTYGFAN 105
P P N + EM E DG E +EKF YGF
Sbjct: 98 TPSTTHHQPHGNQLVEEMDDSEDDDEGDGSEFLVEQQPAAEPEEPKSDGKIEKFGYGFGW 157
Query: 106 KISNEFCSIGNEFPQIFELKAPENVAVDERNSMRMKHENDKFSSDHYLADFFD--DELLA 163
+ +E +I ++ PENV +++R M+ + + F YLAD + +ELLA
Sbjct: 158 SKFGVIERLRDEIGKIVDILEPENVEIEKRADKLMEFDWENFDEGRYLADTLEPEEELLA 217
Query: 164 PYLSSTSYWDKGDFKNEVEFTDEEVAILKELP-NKHYLLSKEEYREIMLGLIDILFGYCY 222
S F ++E +DE+ LK+L +K EIM LIDI+FGYCY
Sbjct: 218 VISSK--------FAQKLEISDEDRTKLKDLKKSKTSAKINGNDVEIMTSLIDIVFGYCY 269
Query: 223 DKRTTLNESTVESSWTINKLSSTLSWFCTFLDTRHVLIACYRRALTYPIFRNYELCNKVK 282
D+R ES ES W KLS +LS+F F + L+AC RRALTYP++R+++L +V
Sbjct: 270 DQRVNDWESACESGWNCAKLSPSLSFFAKFSSVKECLLACTRRALTYPLYRSFQLTQRVI 329
Query: 283 NDLVSLLRK--GKKLVIKCMIEVHQMFNTSNDARYILNQLYIKDYLVFLQKCRNEEIMEI 340
D+ ++ G+ ++ + ++H++F S + RYILN L I DY+ ++Q +E + I
Sbjct: 330 QDVCHVITAGGGRPALLHILCDLHRIFIESGEFRYILNDLMIADYIFWIQTVPDEILTRI 389
Query: 341 CNNIANI 347
++ I
Sbjct: 390 QTDLTEI 396
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 33.9 bits (74), Expect = 0.23
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 145 DKFSSDHYLADFFDDELLAPYLSSTSYWDKGDFKNEVEFTDEEVAILKELPNKHYLL 201
D+FS+ YL D EL+ S S D+G F N V F E V I + H LL
Sbjct: 2130 DQFSNPAYLIDEGGIELVTQNTSLVSSHDRGSFNNPV-FEQEMVPIYNDTVENHELL 2185
>AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical
protein C33E10.6 protein.
Length = 1014
Score = 31.5 bits (68), Expect = 1.2
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 170 SYWDKGDFKNEVEFTDEEVAILKELPNKHYLLSKEEYREIMLGL-IDILFGYCYDKRTTL 228
S+W K ++N +E + A+ + PN Y+ K + + I F +K T
Sbjct: 197 SFWSKTKYENHLELCSKNKAVEYKKPNYDYIEFKNFKKSQKIPFTIYSDFESIIEKYDTA 256
Query: 229 NESTVESSWTINKLSSTLSWFCTFL 253
+ + SWT NK S FC +
Sbjct: 257 -DCSHNDSWTQNKAKHIASAFCAIV 280
>Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical
protein C34F6.9 protein.
Length = 1181
Score = 30.7 bits (66), Expect = 2.1
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 57 LDMITNLLAPRDIPDVNPNLVEMLEEDGITLENDSDSENLEKFTYGFANKISNEFCSIGN 116
L M+TNL++ R D P V +L+ + +E++ +E Y F NK E+
Sbjct: 914 LCMLTNLISERPRADDTPAFVALLKSNWKNIEDEGMQCVMEAMQY-FFNKFDEEYMHAHP 972
Query: 117 EFPQIFELK 125
FE++
Sbjct: 973 PIRSYFEIE 981
>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
Length = 1938
Score = 30.7 bits (66), Expect = 2.1
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 283 NDLVSLLRKGKKLVIKCMIEVHQMFNTSNDARYILNQLYIKDYLVFLQKCR 333
N L+++L K I+C+I + + + DA +LNQL L ++ CR
Sbjct: 661 NKLMTMLHKTHPHFIRCIIPIEKKQSGMIDAALVLNQLTCNGVLEGIRICR 711
>Z93394-3|CAD59167.1| 228|Caenorhabditis elegans Hypothetical
protein Y48E1C.4a protein.
Length = 228
Score = 30.3 bits (65), Expect = 2.8
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 229 NESTVESSWTINKL-SSTLSWFCTFLDTRHVLIACYRRALTYPIFRNYELCNKVKNDLVS 287
NE + W + L SS +S+F +F+ + + AL I R + V + +
Sbjct: 131 NEDVIVVMWRLTTLDSSFMSYFPSFITKKENKMIVKEGALDVQIDREGHVLRIVNRPITA 190
Query: 288 LLRKGKKLVIKCMIEVHQMF 307
R+G K + K E HQ +
Sbjct: 191 SDREGAKSLAKMKEEQHQEY 210
>Z78065-5|CAB01515.1| 954|Caenorhabditis elegans Hypothetical
protein T09E8.2 protein.
Length = 954
Score = 30.3 bits (65), Expect = 2.8
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 75 NLVEMLEEDGITLENDSDSEN--LEKFTYGFANKISNEFCS----IGNEFPQIFELK 125
NL + E+G+ +DSD EN +EK +K + CS IGNEFP F K
Sbjct: 395 NLKIGISEEGVEYSDDSDEENELIEKMGDIPYSKRLCQVCSAVEPIGNEFPNNFPYK 451
>Z83120-5|CAB05588.1| 1467|Caenorhabditis elegans Hypothetical
protein R06A4.8 protein.
Length = 1467
Score = 29.9 bits (64), Expect = 3.7
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 174 KGDFKNEVEFTDEEVAILKE-LPNKHYLLSKEEYREIMLGLIDILFGYCYDK 224
+GD K+E E ++ V +E L NK+ ++E + I+ GL ++ G Y++
Sbjct: 348 RGDAKSEEERVEKCVRSFEEALNNKNLEAARESWEVILAGLAAVMGGITYER 399
>Z68106-8|CAA92125.2| 558|Caenorhabditis elegans Hypothetical
protein F41E7.2 protein.
Length = 558
Score = 29.9 bits (64), Expect = 3.7
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 3 MAENFLFVSSPYFLRLRLPGRIVDDDRAKGSYTCDSGDFNLTFEKETAGEHFENLDMITN 62
+ E L V +P L+++ G + S D D NL +K ++ N TN
Sbjct: 458 IVEILLDVLAPRILKIK-EGTSTYNRNITNSTILDEMDPNLELKKTSSSNSTNNSR--TN 514
Query: 63 LLAPRDIPDVNPNLVEMLEEDGITLENDSDSENLEKFTYGFANKIS 108
L R I ++NPN V + E+G + + S N + TY N+I+
Sbjct: 515 L-NNRIIYELNPNFVPISIENGYSRASYQHSNNTK--TYASGNRIN 557
>Z49153-3|CAD30426.1| 558|Caenorhabditis elegans Hypothetical
protein F41E7.2 protein.
Length = 558
Score = 29.9 bits (64), Expect = 3.7
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 3 MAENFLFVSSPYFLRLRLPGRIVDDDRAKGSYTCDSGDFNLTFEKETAGEHFENLDMITN 62
+ E L V +P L+++ G + S D D NL +K ++ N TN
Sbjct: 458 IVEILLDVLAPRILKIK-EGTSTYNRNITNSTILDEMDPNLELKKTSSSNSTNNSR--TN 514
Query: 63 LLAPRDIPDVNPNLVEMLEEDGITLENDSDSENLEKFTYGFANKIS 108
L R I ++NPN V + E+G + + S N + TY N+I+
Sbjct: 515 L-NNRIIYELNPNFVPISIENGYSRASYQHSNNTK--TYASGNRIN 557
>AF022982-5|AAB69936.2| 799|Caenorhabditis elegans Hypothetical
protein T23B12.4 protein.
Length = 799
Score = 29.9 bits (64), Expect = 3.7
Identities = 13/57 (22%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 81 EEDGITLENDSDSENLEKF--TYGFANKISNEFCSIGNEFPQIFEL--KAPENVAVD 133
+ D + +D D +++++F +GFA+ ++ C + + + +L +AP+N+ D
Sbjct: 292 QNDDENVGDDEDEDDMKQFKPNFGFASILAERLCKVTKAYAETVKLGRRAPDNIDGD 348
>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 29.1 bits (62), Expect = 6.4
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 283 NDLVSLLRKGKKLVIKCMIEVHQMFNTSNDARYILNQLYIKDYLVFLQKCR 333
N+L+++L K I+C+I + + DA +LNQL L ++ CR
Sbjct: 663 NNLMTMLNKTHPHFIRCIIPNEKKQSGMIDAALVLNQLTCNGVLEGIRICR 713
>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 29.1 bits (62), Expect = 6.4
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 283 NDLVSLLRKGKKLVIKCMIEVHQMFNTSNDARYILNQLYIKDYLVFLQKCR 333
N+L+++L K I+C+I + + DA +LNQL L ++ CR
Sbjct: 663 NNLMTMLNKTHPHFIRCIIPNEKKQSGMIDAALVLNQLTCNGVLEGIRICR 713
>Z81047-12|CAB60283.1| 322|Caenorhabditis elegans Hypothetical
protein C41G6.14 protein.
Length = 322
Score = 29.1 bits (62), Expect = 6.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 240 NKLSSTLSWFCTFLDTRHVLIACYRRALTYPIFR 273
++ S +SW+C + T H I LTYP FR
Sbjct: 269 SQYSQKVSWYCMMVMTAHSTINSIVIILTYPEFR 302
>Z81037-1|CAB02745.1| 819|Caenorhabditis elegans Hypothetical
protein C17E4.2 protein.
Length = 819
Score = 29.1 bits (62), Expect = 6.4
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 67 RDIPDVNPNL-VEMLEEDGITLENDSDSENLEKFTYGFANKISNEFCSIGNEFPQIFELK 125
+DIPD N VEM D E D E LE+FT NK NE PQ E++
Sbjct: 401 KDIPDQNDRARVEMWATDKYQKE-DVLEEKLERFTKLLVNKKFNEKTKAAKINPQSKEIE 459
>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
protein.
Length = 1966
Score = 29.1 bits (62), Expect = 6.4
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 283 NDLVSLLRKGKKLVIKCMIEVHQMFNTSNDARYILNQLYIKDYLVFLQKCR 333
N+L+++L K I+C+I + + DA +LNQL L ++ CR
Sbjct: 666 NNLMTMLNKTHPHFIRCIIPNEKKQSGMIDAALVLNQLTCNGVLEGIRICR 716
>AF100672-1|AAC68997.2| 334|Caenorhabditis elegans Hypothetical
protein W05E7.2 protein.
Length = 334
Score = 29.1 bits (62), Expect = 6.4
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 177 FKNEVEFTDEEVAILKELPNKHYLLSKEEYREIMLGLIDILFGYCYD 223
+ N+V +E A + + N Y + K Y GL+ +LFG+ D
Sbjct: 45 YVNKVNRKRDEAAFIFPITNHFYKMVKTSYIIFTCGLLLVLFGFSLD 91
>Z82057-2|CAD89759.1| 561|Caenorhabditis elegans Hypothetical
protein T26H8.4 protein.
Length = 561
Score = 28.7 bits (61), Expect = 8.5
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 238 TINKLSSTLSWF---CTFLDTRHVLIACYRRALTYPIFRNYELCNKVKNDL 285
TI K++S+ +F CT + + V+ + + T P+F+N+ N +DL
Sbjct: 220 TIGKINSSTIFFICLCTLPEYQKVVQDVFPKKFTLPLFKNFTSSNFSSSDL 270
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.136 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,830,949
Number of Sequences: 27539
Number of extensions: 439041
Number of successful extensions: 1261
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1247
Number of HSP's gapped (non-prelim): 20
length of query: 434
length of database: 12,573,161
effective HSP length: 83
effective length of query: 351
effective length of database: 10,287,424
effective search space: 3610885824
effective search space used: 3610885824
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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