GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002304-TA|BGIBMGA002304-PA|IPR007009|SHQ1 protein
         (434 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   5.0  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   8.8  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   8.8  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   8.8  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   8.8  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   8.8  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   8.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   8.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   8.8  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 7/26 (26%), Positives = 18/26 (69%)

Query: 84  GITLENDSDSENLEKFTYGFANKISN 109
           G+ +++DS +EN+E + +G   ++ +
Sbjct: 229 GLRIQSDSLAENVEGYVHGETKQVQS 254


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 3/35 (8%)

Query: 28  DRAKGSYTCDSGDFNLTFEKETAGEHFENLDMITN 62
           D   GS+T D    +L    ET G   +  D ITN
Sbjct: 126 DMKFGSWTYDGNQVDLVLSSETGG---DLSDFITN 157


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 3/35 (8%)

Query: 28  DRAKGSYTCDSGDFNLTFEKETAGEHFENLDMITN 62
           D   GS+T D    +L    ET G   +  D ITN
Sbjct: 126 DMKFGSWTYDGNQVDLVLSSETGG---DLSDFITN 157


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 3/35 (8%)

Query: 28  DRAKGSYTCDSGDFNLTFEKETAGEHFENLDMITN 62
           D   GS+T D    +L    ET G   +  D ITN
Sbjct: 126 DMKFGSWTYDGNQVDLVLSSETGG---DLSDFITN 157


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 3/35 (8%)

Query: 28  DRAKGSYTCDSGDFNLTFEKETAGEHFENLDMITN 62
           D   GS+T D    +L    ET G   +  D ITN
Sbjct: 126 DMKFGSWTYDGNQVDLVLSSETGG---DLSDFITN 157


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 3/35 (8%)

Query: 28  DRAKGSYTCDSGDFNLTFEKETAGEHFENLDMITN 62
           D   GS+T D    +L    ET G   +  D ITN
Sbjct: 126 DMKFGSWTYDGNQVDLVLSSETGG---DLSDFITN 157


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 3/35 (8%)

Query: 28  DRAKGSYTCDSGDFNLTFEKETAGEHFENLDMITN 62
           D   GS+T D    +L    ET G   +  D ITN
Sbjct: 126 DMKFGSWTYDGNQVDLVLSSETGG---DLSDFITN 157


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 3/35 (8%)

Query: 28  DRAKGSYTCDSGDFNLTFEKETAGEHFENLDMITN 62
           D   GS+T D    +L    ET G   +  D ITN
Sbjct: 194 DMKFGSWTYDGNQVDLVLSSETGG---DLSDFITN 225


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 3/35 (8%)

Query: 28  DRAKGSYTCDSGDFNLTFEKETAGEHFENLDMITN 62
           D   GS+T D    +L    ET G   +  D ITN
Sbjct: 194 DMKFGSWTYDGNQVDLVLSSETGG---DLSDFITN 225


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,374
Number of Sequences: 429
Number of extensions: 4553
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 9
length of query: 434
length of database: 140,377
effective HSP length: 60
effective length of query: 374
effective length of database: 114,637
effective search space: 42874238
effective search space used: 42874238
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)