GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002303-TA|BGIBMGA002303-PA|undefined
         (136 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   0.98 
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   3.0  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   3.0  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   3.0  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 23.0 bits (47), Expect = 0.98
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 39  FTVLKDESFTKFVEYH--IGKNVEKILSAAGVE 69
           F   +DE F  FV YH  +G+ V+   S  G +
Sbjct: 342 FLQCQDEKFESFVYYHRILGETVDLFNSLFGYQ 374


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 91  ELPHAGLYGSFHCHTTVLQRNGDDNEVVGCLDVTFEFKANND 132
           E+P AGL GS      +    G++N      +    F  N++
Sbjct: 105 EMPSAGLCGSHDEIPDISSTRGNNNNTPSATNNNTNFNNNSN 146


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 91  ELPHAGLYGSFHCHTTVLQRNGDDNEVVGCLDVTFEFKANND 132
           E+P AGL GS      +    G++N      +    F  N++
Sbjct: 53  EMPSAGLCGSHDEIPDISSTRGNNNNTPSATNNNTNFNNNSN 94


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 91  ELPHAGLYGSFHCHTTVLQRNGDDNEVVGCLDVTFEFKANND 132
           E+P AGL GS      +    G++N      +    F  N++
Sbjct: 236 EMPSAGLCGSHDEIPDISSTRGNNNNTPSATNNNTNFNNNSN 277


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.142    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,469
Number of Sequences: 317
Number of extensions: 1535
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 136
length of database: 114,650
effective HSP length: 51
effective length of query: 85
effective length of database: 98,483
effective search space:  8371055
effective search space used:  8371055
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.9 bits)
S2: 39 (19.8 bits)