GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002303-TA|BGIBMGA002303-PA|undefined
         (136 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    25   3.1  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   4.1  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    25   5.5  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    25   5.5  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    25   5.5  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    24   9.5  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    24   9.5  

>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 8   FNGVLKIETRLDDSYGIEIKVCKFVDGGCKPFTVLKDESFTKFVEYHIGKNVEKILSAAG 67
           F+G +   + +   + IEI V  F    CKP  V        FV Y +  NV+ +     
Sbjct: 148 FSGHMPYCSSVPFEFSIEIGVISFCR--CKPSLVFPPHLKINFVAYSLVGNVDNV-QFPY 204

Query: 68  VEPARFPIEPCEKKIT-GYLFSYEELPHAG 96
           +   R   +  +K +  GY F Y  +P  G
Sbjct: 205 IGRFRLRSQKSDKVMNKGYPFGY-RIPSVG 233


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 100 SFHCHTTVLQRNGDDNEVVGCLDVTFEFKANNDI 133
           S H HT+ LQR      +  C D+T  F   N +
Sbjct: 267 SLHVHTSTLQRELVLKILKACPDITASFIERNSL 300


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)

Query: 36  CKPFTVLKDESFTKFVEYHIGKNVE 60
           C PFT LKD    K V   +G NVE
Sbjct: 888 CAPFTTLKD--VLKEVPQSVGLNVE 910


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 18 LDDSYGIEIKVCKFVDGGCK-PFTVLKDESFTKFVEYHIGKNVEKILSAAGV 68
          + + Y   I+     D  C   FT +  E F K  EY +    EKIL   G+
Sbjct: 15 ITEKYAAIIQKPSVKDSDCIITFTCISLEEFEKIKEYELLFGGEKILGTLGL 66


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 79  EKKITGYLFSYEELPHAGLYGSFHCHTTVLQRN 111
           E+ +  YL  Y  LP + +   FH     +++N
Sbjct: 309 ERSLLDYLIPYSALPFSKIAVDFHIDENFIEKN 341


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 2   NRTHDGFNGVLKIETR-LDDSYGIEIKVC--KFVDGGCKPFTVLKDESFTKFVEYHIGK 57
           NR  D  +G   +E + +  S    ++VC  +FV+G  K      DE  T  ++YH  K
Sbjct: 419 NRGFDLLDGQKNLEAKTVSPSNFCALEVCALQFVNGVHKSVVKHLDEKETWSIKYHFRK 477


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 113 DDNEVVGCLDVTFEFKAN 130
           D+N V+  LD   EFKAN
Sbjct: 775 DENVVIDVLDGELEFKAN 792


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.142    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 680,039
Number of Sequences: 5004
Number of extensions: 28300
Number of successful extensions: 59
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 55
Number of HSP's gapped (non-prelim): 7
length of query: 136
length of database: 2,362,478
effective HSP length: 66
effective length of query: 70
effective length of database: 2,032,214
effective search space: 142254980
effective search space used: 142254980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)