Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002303-TA|BGIBMGA002303-PA|undefined
(136 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0058 - 493758-494114 29 1.7
05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816... 29 1.7
01_06_1334 + 36389179-36389289,36389777-36389839,36389930-363901... 29 1.7
08_01_0849 - 8336065-8336736,8336812-8337051,8337143-8337205,833... 27 5.3
01_01_0014 + 84379-84600,84737-84830,84935-85086,85212-85299,853... 27 5.3
06_03_0696 + 23617687-23617851,23618838-23619536 27 6.9
01_06_0152 - 27041070-27041217,27041939-27041993,27043321-27043633 26 9.2
>12_01_0058 - 493758-494114
Length = 118
Score = 28.7 bits (61), Expect = 1.7
Identities = 20/75 (26%), Positives = 31/75 (41%)
Query: 11 VLKIETRLDDSYGIEIKVCKFVDGGCKPFTVLKDESFTKFVEYHIGKNVEKILSAAGVEP 70
V+ +E D +G V G C+P + FT +E + GK ++ V P
Sbjct: 42 VVSLEAPEDVPHGCSSIVSALYPGSCRPEAIAYSCCFTSPLELYSGKKSKEKGGDLWVPP 101
Query: 71 ARFPIEPCEKKITGY 85
A + E E+ I Y
Sbjct: 102 ACYKWEGKEETILHY 116
>05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,
8165938-8166012,8166674-8166846,8168697-8168795,
8169002-8169161,8169321-8169464,8169551-8169723,
8169796-8169991,8170061-8170258,8170864-8171016,
8171838-8171959,8172037-8172136,8172221-8172316,
8172400-8172530,8173717-8173819,8174373-8174555,
8174632-8174724,8174818-8174853,8175672-8175773,
8176310-8176472,8176557-8176678,8176994-8177158,
8177667-8177849,8178679-8178831,8179136-8179288,
8179373-8179444,8179530-8179664,8179739-8179800,
8179999-8180096,8180628-8180737,8180832-8181005,
8181092-8181157,8181847-8181915,8181989-8182099,
8182418-8182558,8182638-8182766,8182864-8183029,
8183174-8183388,8184883-8185089,8185501-8185572,
8185897-8186010,8186090-8186281,8186489-8186569,
8186654-8186728,8186812-8186878,8187292-8187452,
8187943-8188116,8188209-8188337,8188421-8188504,
8188589-8188650,8188728-8188800,8189008-8189142,
8189790-8189960,8190054-8190319,8190440-8190458
Length = 2448
Score = 28.7 bits (61), Expect = 1.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 86 LFSYEELPHAGLYGSFHCHTTVLQRNGDDNEVV 118
LF++ E+P YG+ H HT V + E++
Sbjct: 2309 LFNFNEVPQVTNYGNAHSHTVVNSEEAANRELM 2341
>01_06_1334 +
36389179-36389289,36389777-36389839,36389930-36390169,
36390245-36390916
Length = 361
Score = 28.7 bits (61), Expect = 1.7
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 30 KFVDGGCKPFTVLKDE-----SFTKFVEYHIGKNVEKILSAAGV-EPARFPIEPCEKKIT 83
K VDG +PF VL + F + +++H E + V EP+++ + E ++T
Sbjct: 96 KLVDGSGEPFFVLNSDVISEYPFAELIKFHKSHGGEATIMVTKVDEPSKYGVVVME-EVT 154
Query: 84 GYLFSYEELP 93
G + + E P
Sbjct: 155 GMVEKFVEKP 164
>08_01_0849 -
8336065-8336736,8336812-8337051,8337143-8337205,
8337686-8337796
Length = 361
Score = 27.1 bits (57), Expect = 5.3
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 30 KFVDGGCKPFTVLKDE-----SFTKFVEYHIGKNVEKILSAAGV-EPARFPIEPCEKKIT 83
K VDG +PF VL + F + +++H E + V EP+++ + E + T
Sbjct: 96 KLVDGSGEPFFVLNSDVISEYPFAELIKFHKNHGGEATIMVTKVDEPSKYGVVVME-EAT 154
Query: 84 GYLFSYEELP 93
G + + E P
Sbjct: 155 GMVEKFVEKP 164
>01_01_0014 +
84379-84600,84737-84830,84935-85086,85212-85299,
85348-86681,87291-87398,87500-87583
Length = 693
Score = 27.1 bits (57), Expect = 5.3
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 68 VEPARFPIEPCEKKITGYLFSYEELPHAGLYGSFHCHT 105
VE P++PC TG +S +E P L S HC T
Sbjct: 482 VEMTCIPLDPCA---TGVPYSVKETPAGVLCTSDHCST 516
>06_03_0696 + 23617687-23617851,23618838-23619536
Length = 287
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 56 GKNVEKILSAAGVEPARFPIEPCEKK-ITGYLFSYEEL 92
G ++L+A G++P P P E++ + G L++ E+
Sbjct: 193 GDGQPRLLAAFGIKPESLPANPTERRFVAGILYAALEM 230
>01_06_0152 - 27041070-27041217,27041939-27041993,27043321-27043633
Length = 171
Score = 26.2 bits (55), Expect = 9.2
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 11 VLKIETRLDDSYGIEIKVCKFVDGGCKPFTVLKDESFTKFVEYHIGKNVEKILSAAGVEP 70
V+K++ R+D+S G + C F GC + T++V+ GK +E++++ E
Sbjct: 71 VMKLQIRVDESSGKIVDAC-FKTFGCGS-AIASSSVATEWVK---GKQMEEVVTIKNTEI 125
Query: 71 AR 72
A+
Sbjct: 126 AK 127
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.142 0.435
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,235,250
Number of Sequences: 37544
Number of extensions: 172412
Number of successful extensions: 269
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 267
Number of HSP's gapped (non-prelim): 7
length of query: 136
length of database: 14,793,348
effective HSP length: 75
effective length of query: 61
effective length of database: 11,977,548
effective search space: 730630428
effective search space used: 730630428
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
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