GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002303-TA|BGIBMGA002303-PA|undefined
         (136 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)                 28   2.3  
SB_43100| Best HMM Match : Metallophos (HMM E-Value=0.63)              28   3.1  
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_41257| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_53217| Best HMM Match : RVT_1 (HMM E-Value=3.1e-13)                 27   7.2  
SB_48195| Best HMM Match : DUF229 (HMM E-Value=0)                      27   7.2  

>SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)
          Length = 1632

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 9   NGVLKIETRLDDSYGIEIKV-CKFVDGGCKPFTVLKDESFT-KFVEYHIG-KNVEKILSA 65
           NG L   T L+DSY  E KV  + +D G       K ++ T     Y +G +N  K+   
Sbjct: 81  NGGLNGSTALNDSYSNEFKVDIRMIDFGRSFHQGTKRQNTTGPDRGYLLGIENPVKVSVT 140

Query: 66  AGVEPARFPIEPC 78
             V+P +  + PC
Sbjct: 141 PHVDPVKVSVTPC 153


>SB_43100| Best HMM Match : Metallophos (HMM E-Value=0.63)
          Length = 234

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 6   DGFNGVLKIETRL----DDSYGIEIKVCKFVDGGCKPFTVLKDESFTKFVEYHIGK 57
           D F+ ++KI   +    D ++G+ +K+  +V+G C+    L   SF  F++ H+GK
Sbjct: 90  DEFDQMVKISPLMLELGDRAHGVMLKINGWVNG-CRRMLGLPYWSFAGFLKSHLGK 144


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 50   FVEYHIGKNVEKILSAAGVEPARFPIEPCEKKITGYL 86
            FV Y I  + E+I    G+    FP + C KK   YL
Sbjct: 1257 FVRYVIYLHREQIAKEVGINLMAFPDDVCSKKPCNYL 1293


>SB_41257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 57  KNVEKILSAAGVEPA-RFPI-EPCEKKITGYLFSYEELPHAGLYGS 100
           +N   + SA G EP+ R  +  P ++++ G L  +   PH+G YG+
Sbjct: 114 QNNPNVGSANGYEPSVRLDLMSPRDERLIGDLDGFGRRPHSGEYGA 159


>SB_53217| Best HMM Match : RVT_1 (HMM E-Value=3.1e-13)
          Length = 436

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 50  FVEYHIGKNVEKILSAAGVEPARFPIE-----PCEKKITGYLFSYEELPH 94
           F+E  +G ++  ++ A GV P+   +      P  ++++ +LF Y   PH
Sbjct: 297 FLEDRVG-SLGHVIDAEGVHPSPEKVRAVVDAPARQRLSSFLFPYRNTPH 345


>SB_48195| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 1743

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 63  LSAAGVEPARFP-IEPCEKKITGYLFSYEELPHAGL-YGSFHCHTTVLQRNGDDNEVVGC 120
           LS A       P ++P +  +T +    + L   G+ + S+H +T  + R  DD  VVGC
Sbjct: 488 LSVANSSGCTLPRLDPFDPSVTAFFQRRQPLQCEGVAFTSYHGNTLKVVRK-DDRVVVGC 546


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.142    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,983,544
Number of Sequences: 59808
Number of extensions: 206321
Number of successful extensions: 362
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 361
Number of HSP's gapped (non-prelim): 7
length of query: 136
length of database: 16,821,457
effective HSP length: 75
effective length of query: 61
effective length of database: 12,335,857
effective search space: 752487277
effective search space used: 752487277
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)