GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002303-TA|BGIBMGA002303-PA|undefined
         (136 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-16|CAA21579.1|  137|Caenorhabditis elegans Hypothetical...    29   1.5  
Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical pr...    28   2.0  
Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical pr...    28   2.0  
AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin pro...    28   2.0  
Z71181-2|CAA94895.1|  301|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF025469-3|AAG00031.2|  271|Caenorhabditis elegans Hypothetical ...    27   6.2  
Z70307-14|CAA94338.2|  409|Caenorhabditis elegans Hypothetical p...    26   8.2  

>AL032631-16|CAA21579.1|  137|Caenorhabditis elegans Hypothetical
          protein Y106G6H.16 protein.
          Length = 137

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 32 VDGGCKPFTVLKDESFTKFVEYHIGKNVEKILSAAGVEPARFPIEPCEKK 81
          VD  C P T +K +   K + YHI K     + +  +    F   P E K
Sbjct: 41 VDAECVPSTCVKPDKICKILNYHINKTSSPPVQS--IRMRHFTRSPTENK 88


>Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical
           protein F33C8.1b protein.
          Length = 1234

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 29  CKFVDGGCKPF--TVLKDESFTKFVEYHIGKNVEKILSAAGVEPARFPIEPCEKK 81
           C FVD  C PF  TV    SF   ++    K+ ++  +     P R  ++ CE++
Sbjct: 617 CVFVDSSCVPFDPTVSYKSSFASMIKSSTPKSFDECTNT----PLRLALKTCEEQ 667


>Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical
           protein F33C8.1a protein.
          Length = 1271

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 29  CKFVDGGCKPF--TVLKDESFTKFVEYHIGKNVEKILSAAGVEPARFPIEPCEKK 81
           C FVD  C PF  TV    SF   ++    K+ ++  +     P R  ++ CE++
Sbjct: 617 CVFVDSSCVPFDPTVSYKSSFASMIKSSTPKSFDECTNT----PLRLALKTCEEQ 667


>AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin
           protein.
          Length = 1329

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 29  CKFVDGGCKPF--TVLKDESFTKFVEYHIGKNVEKILSAAGVEPARFPIEPCEKK 81
           C FVD  C PF  TV    SF   ++    K+ ++  +     P R  ++ CE++
Sbjct: 617 CVFVDSSCVPFDPTVSYKSSFASMIKSSTPKSFDECTNT----PLRLALKTCEEQ 667


>Z71181-2|CAA94895.1|  301|Caenorhabditis elegans Hypothetical
           protein K07C5.2 protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 79  EKKITGYLFSYEELPHAGLYGSFHC-HTTVLQRNGDDNEVVGCLDVTFEFKANND 132
           EK +      Y + P A LY   HC +T+++ ++   + +   L  T + K   D
Sbjct: 223 EKPLVDLCQKYNQTPQAILYAFAHCSNTSMIPKSATPSRIHDNLHNTIKIKLTED 277


>AF025469-3|AAG00031.2|  271|Caenorhabditis elegans Hypothetical
           protein W09B6.4 protein.
          Length = 271

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 73  FPIEPCEKKITGYLFSYEELPHAGLYGSFHCHTTVLQRNGDDNEVVGCLDVTFEFKANND 132
           FP  P  + +T   F  ++  +  +   F C TTV  + G+   +V  L   F+F A+  
Sbjct: 116 FPATPHLEHLTNSTFKVKKSANPEI---FECQTTVFDKKGNLTIMVRLLTRKFKFFADRM 172

Query: 133 IK 134
           +K
Sbjct: 173 LK 174


>Z70307-14|CAA94338.2|  409|Caenorhabditis elegans Hypothetical
           protein C39E9.12 protein.
          Length = 409

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 27  KVCKFVDGGCKPFTVLKDESFTKFVEYHIGKNVEKILSAAGVEP 70
           K C+       P TV +D++FT+++    G    ++   AG  P
Sbjct: 307 KPCRLTSRKIIPATVPEDDTFTEYISTPKGTTPTRVPRRAGYTP 350


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.142    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,726,478
Number of Sequences: 27539
Number of extensions: 158698
Number of successful extensions: 255
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 253
Number of HSP's gapped (non-prelim): 7
length of query: 136
length of database: 12,573,161
effective HSP length: 74
effective length of query: 62
effective length of database: 10,535,275
effective search space: 653187050
effective search space used: 653187050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)