GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002302-TA|BGIBMGA002302-PA|undefined
         (57 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   1.2  
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    24   2.1  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    24   2.1  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    23   4.8  
SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa...    23   4.8  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    23   6.4  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      22   8.4  
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    22   8.4  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    22   8.4  

>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 22  SHRPISVAIDSENGSLR 38
           SH P S+ +DSE+G LR
Sbjct: 177 SHYPRSILVDSEDGVLR 193


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 12  HKNFIIHRSFSHRPISVAIDSENGSL 37
           HKNFI+HR      + +  DS    L
Sbjct: 167 HKNFIVHRDLKIENVLLTQDSRQVKL 192


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 1   MFVRTIPSILGHKNFIIHRSFSHRPISVAIDSENGSLRFFE 41
           +F +  PS+     F+   SF  RP +  I S++  L + E
Sbjct: 412 LFKKEFPSLPSLSTFLAILSFKPRPFASIIPSKDHELVYLE 452


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 7   PSILGHKNFII-HRSFSHRPISVAIDSENGSLRFFEEIRADD 47
           P+ L   +F + +   +H P    ++S   S+   EE++ D+
Sbjct: 689 PNRLPFNDFRVRYEIMAHLPTGTYVESRRASVMILEELKIDE 730


>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
           Ark1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 12/37 (32%), Positives = 15/37 (40%)

Query: 12  HKNFIIHRSFSHRPISVAIDSENGSLRFFEEIRADDN 48
           HK  +IHR      I + ID E     F   + A  N
Sbjct: 204 HKKHVIHRDIKPENILLGIDGEIKLSDFGWSVHAPSN 240


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 4   RTIPSILGHKNFIIHRSFSHRPISVAIDSENGSLRFFE 41
           + I  + GH+  + H SFS     +A  S + S+R ++
Sbjct: 380 KPITKMHGHQKVVNHASFSPDGRCIATASFDSSVRLWD 417


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 11  GHKNFIIHRSFSH 23
           GHKN + +RSF H
Sbjct: 154 GHKNHLENRSFFH 166


>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 4/39 (10%)

Query: 8   SILGHKNFIIHRSFSHRPISVAIDSENGSLRFFEEIRAD 46
           S+L HKN I         +SV  DS++    FF +  +D
Sbjct: 353 SLLAHKNSIYDVQLGGPGVSVVTDSDS----FFPQYESD 387


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 11  GHKNFIIHRSFSHRPISVAIDSENGSLRFFEEIRAD 46
           G   F     FSHRP+ +  +    S R+ E+I  D
Sbjct: 574 GIARFQFGPQFSHRPLVLGSNVRPVSERYNEQIAED 609


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.138    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 283,402
Number of Sequences: 5004
Number of extensions: 9101
Number of successful extensions: 27
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 9
length of query: 57
length of database: 2,362,478
effective HSP length: 38
effective length of query: 19
effective length of database: 2,172,326
effective search space: 41274194
effective search space used: 41274194
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 45 (22.2 bits)