Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002302-TA|BGIBMGA002302-PA|undefined
(57 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0587 + 22555414-22557231 31 0.090
01_05_0745 - 24852048-24853532 29 0.36
11_06_0130 - 20408835-20411771 28 0.83
04_04_1159 - 31352922-31353098,31354117-31354267,31354581-313548... 28 1.1
10_08_0245 + 16138402-16138548,16138648-16138701,16139106-161391... 27 1.5
06_03_0592 + 22585546-22588573,22588680-22589032 27 1.5
12_01_0676 + 5765154-5765241,5765329-5765453,5765533-5765604,576... 27 1.9
06_03_0590 + 22574985-22578018,22578125-22578469,22579171-225792... 27 2.5
01_06_1086 - 34421837-34422311,34422426-34422612,34423162-344232... 26 3.4
07_01_0987 + 8320205-8320472,8321549-8321690,8321773-8321893,832... 26 4.5
05_05_0235 + 23510747-23510843,23511719-23511863,23512398-235124... 26 4.5
09_04_0720 - 19720844-19720975,19721582-19721809,19722108-197222... 25 5.9
06_01_0721 - 5255422-5255790,5256287-5256660,5256845-5257192,525... 25 5.9
05_01_0500 - 4171090-4171191,4171989-4172061,4172376-4172701,417... 25 5.9
02_05_0938 + 32901143-32901215,32901841-32901982,32902243-329023... 25 5.9
02_02_0032 - 6227556-6227926,6228322-6231085 25 5.9
08_01_0680 - 5958066-5960253,5960707-5961503 25 7.8
01_07_0050 - 40751994-40752086,40752193-40752300,40752501-407526... 25 7.8
>06_03_0587 + 22555414-22557231
Length = 605
Score = 31.5 bits (68), Expect = 0.090
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 6 IPSILGHKNFIIHRSFSHRPISVAIDSENGSLRFFEEIRADDN 48
IP +G+ + ++ SFSH +S I G+L E+R D+N
Sbjct: 530 IPPTIGYLHSMVFLSFSHNRLSGQIPGTIGNLVQLNELRLDEN 572
>01_05_0745 - 24852048-24853532
Length = 494
Score = 29.5 bits (63), Expect = 0.36
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 2 FVRTIPSILGHKNFIIHRSFSHRPISVAIDSENGSLRFFEEIRADDNAGQACSVP 56
F TIP LG + +I SH +S I + G L + DN Q +VP
Sbjct: 268 FAGTIPDALGDLSDLILLDLSHNALSGPIPAALGRLSSLRSLILGDNRMQFTTVP 322
>11_06_0130 - 20408835-20411771
Length = 978
Score = 28.3 bits (60), Expect = 0.83
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 5 TIPSILGHKNFIIHRSFSHRPISVAIDSENGSLRFFEEIRADDN 48
TIPS LG+ N ++ + S +S AI S G L + N
Sbjct: 268 TIPSCLGNLNSLLELALSDNTLSGAIPSSLGRLSRLSSLHLSSN 311
>04_04_1159 -
31352922-31353098,31354117-31354267,31354581-31354812,
31354902-31355112,31355791-31355909,31355994-31356176,
31356283-31356481,31356636-31357015,31357127-31357191,
31357925-31357990,31358427-31358501,31358781-31358852,
31359318-31359386,31359476-31359547,31359658-31359729,
31360126-31360230,31360282-31360353,31361053-31361230,
31361707-31361791
Length = 860
Score = 27.9 bits (59), Expect = 1.1
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 5 TIPSILGHKNFIIHRSFSHRPISVAIDSENGSLRFFEEIRADDNAGQACSVP 56
+IP LG+ ++ FS S ++ SE GSL EE+ D+AG + +P
Sbjct: 133 SIPKELGNLTNLVSLGFSSNNFSGSLPSELGSLFKLEELFI-DSAGLSGELP 183
>10_08_0245 +
16138402-16138548,16138648-16138701,16139106-16139171,
16139427-16139483,16140490-16140610,16140704-16140744,
16140835-16140886,16141555-16141623,16141697-16141768,
16141890-16142045,16143067-16143284,16143359-16143398,
16143484-16143602,16143726-16143827,16144256-16144300,
16144890-16145030,16145172-16145267,16145415-16145516,
16145611-16145709
Length = 598
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 21 FSHRPISVAIDSENGSLRFFEEIRADDNAGQACS 54
FS I D++ SLR FEE++ D ++CS
Sbjct: 134 FSLEDIGALSDAKMASLRIFEELQDVDYLARSCS 167
>06_03_0592 + 22585546-22588573,22588680-22589032
Length = 1126
Score = 27.5 bits (58), Expect = 1.5
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 1 MFVRTIPSILGHKNFIIHRSFSHRPISVAIDSENGSLRFFEEIRADDN 48
+F TIP +G+ N + SF+ +S I G+L +I+ D N
Sbjct: 522 LFTGTIPQTIGNLNNLTVLSFAQNKLSGHIPDVFGNLVQLTDIKLDGN 569
>12_01_0676 +
5765154-5765241,5765329-5765453,5765533-5765604,
5765728-5765802,5765880-5765905,5766709-5766870,
5766963-5767037,5767133-5767204,5767289-5767363,
5767461-5767529,5767839-5767910,5768030-5768161,
5768430-5768920,5769315-5769476,5769570-5769709,
5769818-5770037,5770398-5770633,5771560-5772051
Length = 927
Score = 27.1 bits (57), Expect = 1.9
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 5 TIPSILGHKNF-IIHRSFSHRPISVAIDSENGSLRFFEEIRADDNAGQACSVP 56
+IPS + + N +IH + S +I S G L E +R D+NA VP
Sbjct: 193 SIPSQIFNSNMKLIHLLLDNNKFSGSIPSTLGLLNTLEVLRFDNNAQLTGPVP 245
>06_03_0590 +
22574985-22578018,22578125-22578469,22579171-22579217,
22579450-22579573,22579622-22579686
Length = 1204
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 1 MFVRTIPSILGHKNFIIHRSFSHRPISVAIDSENGSLRFFEEIRADDN 48
+F IP +G+ N ++ SF+ +S I G+L +++ D N
Sbjct: 524 VFTGNIPPTIGNMNSLVVLSFAQNKLSGHIPDIFGNLSQLTDLKLDGN 571
>01_06_1086 -
34421837-34422311,34422426-34422612,34423162-34423291,
34423485-34423720,34423804-34423961,34424048-34424128,
34424216-34424281,34424364-34424432,34424722-34424866,
34425645-34426138,34426244-34426811,34429529-34429574
Length = 884
Score = 26.2 bits (55), Expect = 3.4
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 5 TIPSILGHKNFIIHRSFSHRPISVAIDSENGSLRFF 40
TIPS G K ++I +F++ SENGSL F
Sbjct: 82 TIPSTSG-KKYLIRTTFTYGNYDGLRSSENGSLFLF 116
>07_01_0987 +
8320205-8320472,8321549-8321690,8321773-8321893,
8322190-8322264,8322784-8322846,8322934-8323086
Length = 273
Score = 25.8 bits (54), Expect = 4.5
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 11 GHK-NFIIHRSFSHRPISVAIDSENGSLRFFEEIRAD 46
GH NF++HR +++ ++ +N S+ F E ++ D
Sbjct: 78 GHTFNFLLHRGYAYCVVAKESVPKNVSVAFLERLKDD 114
>05_05_0235 +
23510747-23510843,23511719-23511863,23512398-23512469,
23512726-23512797,23512932-23513075,23513161-23513232,
23513330-23513401,23513499-23513573,23513657-23513725,
23514109-23514177,23514295-23514316,23515612-23515663,
23515883-23516133,23516212-23516346,23516615-23516968,
23517155-23517181,23517232-23517390
Length = 628
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 6 IPSILGHKNFIIHRSFSHRPISVAIDSENGSLRFFEEIRADDNAGQACSVP 56
IPS L N ++H + +S + E + + + ++AD+N S+P
Sbjct: 188 IPSELSRLNTLLHLLVDNNNLSGPLPPELAAAKSLKILQADNNNFSGSSIP 238
>09_04_0720 -
19720844-19720975,19721582-19721809,19722108-19722290,
19722361-19722476,19722684-19722836,19722977-19723120,
19723257-19723380,19723548-19724479,19725245-19725422
Length = 729
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 4 RTIPSILGHKNFIIHRSFSHRPISVAIDSENGSLR 38
RTI +L H+N ++HR A SE+ L+
Sbjct: 365 RTIVGVLCHENGVMHRDLKPENFLFANKSEDSPLK 399
>06_01_0721 -
5255422-5255790,5256287-5256660,5256845-5257192,
5257369-5257497,5257585-5257658,5257745-5257816,
5257901-5257969,5258059-5258130,5258208-5258279,
5258512-5258583,5258735-5258806,5258887-5258958,
5259050-5259121,5259203-5259274,5259427-5259498,
5259599-5259670,5259764-5259832,5260072-5260143,
5260428-5260499,5260579-5260650,5260919-5260990,
5261015-5261161,5261249-5261378,5262212-5262290
Length = 931
Score = 25.4 bits (53), Expect = 5.9
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 1 MFVRTIPSILGHKNFIIHRSFSHRPISVAIDSENGSLRFFEEIRADDN 48
MF IPS++G + S+ +S I S G+L + E++ N
Sbjct: 244 MFTGPIPSVIGLMQALAVLDLSYNQLSGPIPSILGNLTYTEKLYMQGN 291
>05_01_0500 -
4171090-4171191,4171989-4172061,4172376-4172701,
4173164-4173555,4174521-4174853,4177118-4177209,
4178052-4178111,4178760-4178903,4180142-4180213,
4180345-4180510,4180776-4180923
Length = 635
Score = 25.4 bits (53), Expect = 5.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 2 FVRTIPSILGHKN--FIIHRSFSHRPISVAIDSENGSL 37
F TIPSILGH F++ SF++ + S N L
Sbjct: 160 FTGTIPSILGHSKGIFLMDLSFNNLSGPAPVFSANSVL 197
>02_05_0938 +
32901143-32901215,32901841-32901982,32902243-32902314,
32902573-32902644,32902711-32902782,32902913-32902948,
32903001-32903072,32903319-32903387,32903483-32903554,
32903668-32903739,32903838-32903909,32904153-32904224,
32904470-32904541,32904623-32904694,32904782-32904853,
32904911-32905003,32905150-32905218,32905315-32905386,
32905479-32905552,32905643-32905771,32905966-32906331,
32906584-32906954,32907522-32907890
Length = 884
Score = 25.4 bits (53), Expect = 5.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 1 MFVRTIPSILGHKNFIIHRSFSHRPISVAIDSENGSLRFFEEI 43
M IPS +G ++ +FS+ + I +E G+LR EI
Sbjct: 329 MVAGPIPSAIGSLEHLLRLNFSNNNLVGYIPAEFGNLRSIMEI 371
>02_02_0032 - 6227556-6227926,6228322-6231085
Length = 1044
Score = 25.4 bits (53), Expect = 5.9
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 1 MFVRTIPSILGHKNFIIHRSFSHRPISVAIDSENGSLRFFEEIRADDN 48
MF +IP +G+ + ++ SF+ +S I GSL E D N
Sbjct: 525 MFSGSIPPTIGNLSNLLVLSFAQNNLSGHIPDSIGSLSQLTEFYIDGN 572
>08_01_0680 - 5958066-5960253,5960707-5961503
Length = 994
Score = 25.0 bits (52), Expect = 7.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 23 HRPISVAIDSENGSLRFFEEIRADDNAGQA 52
H A+D+E SL F E IRA + G A
Sbjct: 889 HPVTDTAVDAERISLAFTEAIRAHTSRGGA 918
>01_07_0050 -
40751994-40752086,40752193-40752300,40752501-40752667,
40752756-40752882,40752984-40753145,40753674-40753837,
40753931-40754024,40754160-40754284,40754387-40754532,
40754676-40754764,40755524-40755589,40755990-40756148
Length = 499
Score = 25.0 bits (52), Expect = 7.8
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 6 IPSILGHKNFIIHRSFSHRPISVAIDSENGSLRFFE 41
IP+++G II S +H I + ++R FE
Sbjct: 189 IPALIGKGGLIISDSLNHNSIVSGARASGATIRVFE 224
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.326 0.138 0.434
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,751,738
Number of Sequences: 37544
Number of extensions: 52718
Number of successful extensions: 261
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 23
length of query: 57
length of database: 14,793,348
effective HSP length: 37
effective length of query: 20
effective length of database: 13,404,220
effective search space: 268084400
effective search space used: 268084400
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)
- SilkBase 1999-2023 -