GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002302-TA|BGIBMGA002302-PA|undefined
         (57 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9232| Best HMM Match : Coq4 (HMM E-Value=1.8)                       26   4.9  
SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26)                  26   4.9  

>SB_9232| Best HMM Match : Coq4 (HMM E-Value=1.8)
          Length = 1392

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 2   FVRTIPSILGHKNFIIHRSFSHRPISV 28
           +V  +P ++ + N   HRS   +P++V
Sbjct: 684 YVEVLPKLMQNYNHTYHRSIKRKPVAV 710


>SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26)
          Length = 906

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/33 (27%), Positives = 20/33 (60%)

Query: 14  NFIIHRSFSHRPISVAIDSENGSLRFFEEIRAD 46
           ++I    F++ PIS+ + S NG+ +  +E+  +
Sbjct: 708 SYIAQGDFAYTPISIKVVSANGNWQMIKELHTN 740


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.326    0.138    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,983,103
Number of Sequences: 59808
Number of extensions: 57723
Number of successful extensions: 122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120
Number of HSP's gapped (non-prelim): 2
length of query: 57
length of database: 16,821,457
effective HSP length: 37
effective length of query: 20
effective length of database: 14,608,561
effective search space: 292171220
effective search space used: 292171220
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)