Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002301-TA|BGIBMGA002301-PA|IPR009003|Peptidase,
trypsin-like serine and cysteine
(186 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0590 + 19044193-19044364,19044464-19045047,19045085-190460... 31 0.57
08_02_0588 + 19036509-19039235 31 0.57
01_05_0290 - 20487105-20487113,20487171-20487213,20488336-204884... 31 0.57
06_03_1076 + 27409107-27409204,27409731-27409835,27409915-274100... 30 0.99
03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,536... 28 4.0
01_06_1078 + 34378985-34380064,34380155-34380283,34380362-343804... 28 5.3
09_01_0102 + 1582793-1582898,1582988-1583093,1584115-1584172,158... 27 7.0
08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821 27 7.0
>08_02_0590 +
19044193-19044364,19044464-19045047,19045085-19046059,
19046219-19046605
Length = 705
Score = 31.1 bits (67), Expect = 0.57
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 120 LQNKEKCTEAYKDIERMNILIDNYMICADGKGNINAKGEQILKGKPEADGCATNP--ENL 177
L+ E EAY D++ N+ +D+ M A + K + L + A+ CA P E+
Sbjct: 344 LEEGEVAEEAYSDVDSQNVAVDDSMAAATEDVKVMNKCKGTLP-RAAAEPCAEGPSKEHF 402
Query: 178 KG 179
KG
Sbjct: 403 KG 404
>08_02_0588 + 19036509-19039235
Length = 908
Score = 31.1 bits (67), Expect = 0.57
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 120 LQNKEKCTEAYKDIERMNILIDNYMICADGKGNINAKGEQILKGKPEADGCATNP--ENL 177
L+ E EAY D++ N+ +D+ M A + K + L + A+ CA P E+
Sbjct: 494 LEEGEVADEAYSDVDSQNVAVDDSMAAATEDVKVMNKCKGTLP-RAAAEPCAEGPSKEHF 552
Query: 178 KG 179
KG
Sbjct: 553 KG 554
>01_05_0290 -
20487105-20487113,20487171-20487213,20488336-20488412,
20489096-20489163,20489266-20489456,20490687-20490798,
20490892-20490943,20491984-20492076,20493065-20493211,
20493381-20493410,20493764-20493862,20495188-20495322,
20495420-20495498,20495989-20496064,20496345-20496423,
20496513-20496547,20497185-20497259,20497405-20497804
Length = 599
Score = 31.1 bits (67), Expect = 0.57
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 16 VIRQLKNAKVATESAYELDYLKIIKWSWIDIAIVKVESEYDFNDEKYTQLCSYKPAIIDV 75
V Q +N V T S L Y +++ D+ + V+ +YD + YTQ+ + +
Sbjct: 214 VFTQNQNNWVPTRSIGLLSYTFLMETGCDDVLVPTVDYQYDISTASYTQMLRHDQKLFSS 273
Query: 76 NYA 78
N A
Sbjct: 274 NLA 276
>06_03_1076 +
27409107-27409204,27409731-27409835,27409915-27410032,
27410180-27410230,27410328-27410419,27410558-27410657,
27411018-27411137,27411227-27411295,27411468-27411514,
27411597-27411652,27412293-27412333,27412570-27412675,
27413891-27414023,27414096-27414645
Length = 561
Score = 30.3 bits (65), Expect = 0.99
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 111 DTLNYAPIMLQNKEKCTEAYKDIERMNILIDNYMICADGKGNINAKGEQILKGKPEA--D 168
D+L YA I + KE C A+ ++ N LID+ I D +++ Q + K A D
Sbjct: 278 DSLCYAFIEFETKEACERAFFKMD--NCLIDDRRIHVDFSQSVSKLWGQFRQSKRNANKD 335
Query: 169 GC 170
GC
Sbjct: 336 GC 337
>03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,
5368467-5368577,5368997-5369068,5369719-5369737,
5369838-5371142,5371317-5371397,5372441-5372604,
5373363-5373466,5373537-5373628,5374079-5374216,
5374370-5374426,5374820-5375046
Length = 1713
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 32 ELDYLKIIKWSWIDIAIVKVESEYDFNDEKYTQLCS 67
+L +K+I W W + K E+E DEK +CS
Sbjct: 1574 DLKLIKLICWIWNKMKRSKQENELSNQDEKDLVICS 1609
>01_06_1078 +
34378985-34380064,34380155-34380283,34380362-34380430,
34380536-34380588,34381309-34381421,34381565-34382132,
34382520-34382580,34382624-34382665
Length = 704
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/35 (28%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Query: 43 WIDIAIVKVESEYDFNDEKYTQLCS--YKPAIIDV 75
+ID I++++SE ++ + +++C+ Y+PAI+ +
Sbjct: 363 YIDAKILRIDSEIEYMKKMLSEVCAFDYRPAIMPI 397
>09_01_0102 +
1582793-1582898,1582988-1583093,1584115-1584172,
1584676-1584745,1585132-1585197,1586374-1586429,
1587992-1588078,1588819-1589139,1589827-1589946,
1590747-1590881,1591529-1591605,1591681-1591756,
1592800-1592874,1592971-1593075,1593299-1593374,
1594482-1594617,1594702-1594804,1595186-1595298,
1596907-1597111,1597173-1597301,1597403-1597517,
1597710-1597795,1599108-1599203,1599615-1599751,
1600374-1600476,1601809-1601888,1602013-1602091,
1602241-1602298,1602489-1602586,1602673-1602767,
1602861-1602918
Length = 1074
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 15 EVIRQLKNAKVATESAYELDYL-KIIKWSWI 44
E+ +++KN + E A+E+D L K + WSW+
Sbjct: 228 ELQQKIKNMEHIEEIAHEIDNLKKKLAWSWV 258
>08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821
Length = 716
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/65 (20%), Positives = 31/65 (47%)
Query: 11 SKIFEVIRQLKNAKVATESAYELDYLKIIKWSWIDIAIVKVESEYDFNDEKYTQLCSYKP 70
S++ + + L + +S ++ K + W+D + V V + D D+++ +L YK
Sbjct: 378 SRVVDSLDDLSLDIPSAKSQFQTLVSKAVSEGWLDSSFVHVGANGDVQDDEHEKLRRYKK 437
Query: 71 AIIDV 75
+ +
Sbjct: 438 EAVSM 442
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.133 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,617,164
Number of Sequences: 37544
Number of extensions: 229526
Number of successful extensions: 359
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 9
length of query: 186
length of database: 14,793,348
effective HSP length: 78
effective length of query: 108
effective length of database: 11,864,916
effective search space: 1281410928
effective search space used: 1281410928
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)
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