GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002301-TA|BGIBMGA002301-PA|IPR009003|Peptidase,
trypsin-like serine and cysteine
         (186 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47002| Best HMM Match : RVT_1 (HMM E-Value=1.5e-16)                 33   0.14 
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_21943| Best HMM Match : Ran_BP1 (HMM E-Value=1.5)                   28   4.1  
SB_16233| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_16978| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  

>SB_47002| Best HMM Match : RVT_1 (HMM E-Value=1.5e-16)
          Length = 894

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 103 EDVSNYNQDTLNYAPIMLQNKEKCTEAYKDIERMNILIDNYMICADGKGNINAKGEQILK 162
           E  +N   DTL Y P   ++ E+     K +E   + + N   C   K  +   G  +  
Sbjct: 230 EGTANMIDDTLVYGPDQQEHDERLERVLKKLESAGVTL-NRDKCEFSKNRVTFLGHVV-- 286

Query: 163 GKPEADGCATNPENLKGILD 182
              ++DG  T+P  +K I D
Sbjct: 287 ---DSDGVRTDPTKIKAIAD 303


>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1465

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 16/110 (14%)

Query: 41   WSWIDIAIVKVESEYDFNDEKYTQLCSYKPAIIDVNYARKYQEPGTDALVLGWGHKEKWR 100
            W   D  I  +   +  N  +Y      +P  +   Y R+  +P    ++LGWG  E  +
Sbjct: 1255 WRTYDSDIALIRLRWKANITEYV-----RPVCLPNGYQRRLVKPRAKGVMLGWGVTEN-K 1308

Query: 101  KPEDVSNYNQDTLNYAPIMLQNKEKCTEAYKDIERMNILIDNYMICADGK 150
            +P         TL  A + + N   C +AY   E     + + M+CA  K
Sbjct: 1309 RP-------SKTLKEAIVPVVNHNACKKAY---ENETWPVTSNMLCAGYK 1348


>SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 109 NQDTLNYAPIMLQNKEKCTEAYKDI 133
           NQ TLN+  + L   + C +AY DI
Sbjct: 96  NQITLNFTDVSLSKDQSCDDAYVDI 120


>SB_21943| Best HMM Match : Ran_BP1 (HMM E-Value=1.5)
          Length = 191

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 10/120 (8%)

Query: 48  IVKVESEYDFNDEKYTQLCSYKPAIIDVNYARKYQEPGTDALVLGWGHKEKW---RKPED 104
           I    SE+ +  E+Y   C Y+     V    +      DA    +G K KW   RK +D
Sbjct: 71  IATESSEFKYK-ERYLGNCLYETTEPLVRRCLQNSVRDNDAAWPKFG-KLKWEFDRKSKD 128

Query: 105 VSNYNQDTLNYAPIMLQNKEKCTEAYKDIERMNILIDNYMICADGKGNINAKGEQILKGK 164
           +S  +  +L  A I  ++      A   +  + +LID+Y    D KG    KG+   KGK
Sbjct: 129 ISINDIKSLEAALIPFRDF-----ASLHLFALQLLIDSYKNNLDTKGRNGRKGKNRRKGK 183


>SB_16233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 81  YQEPGTDALVLGWGHKEKWRKPEDVSNYNQDTLNYAPIMLQNKEKCTEAYKDIERMNILI 140
           Y     + L L W   EK+R+    S +   T N  P  LQ+K K  +A +      +  
Sbjct: 91  YSSMKLELLALKWAVCEKFREHLLGSEFIVFTDNNPPTYLQSKSK-LKAVEQRWAAELAS 149

Query: 141 DNYMI-CADGKGNINAKGEQILKGKPEADGCATNPENLKG 179
            N+ I    GK N NA     L  +  A+G A N E+  G
Sbjct: 150 FNFKIKYRAGKHNTNA---DALSRRRHAEGPAQNDEDEGG 186


>SB_16978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 875

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 11/60 (18%)

Query: 42  SWIDIAIVKVESEYDFNDEKYTQLCSYK--PAIIDVNYARKYQEPGTDALVLGWGHKEKW 99
           S++ IAI  +E  Y FN ++   L S     A+I V++   Y          G+GHK KW
Sbjct: 256 SFVSIAIPTLERRYSFNSKQTGLLVSANDITALILVSFVSFYG---------GYGHKTKW 306


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,733,041
Number of Sequences: 59808
Number of extensions: 281279
Number of successful extensions: 424
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 422
Number of HSP's gapped (non-prelim): 6
length of query: 186
length of database: 16,821,457
effective HSP length: 78
effective length of query: 108
effective length of database: 12,156,433
effective search space: 1312894764
effective search space used: 1312894764
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)