GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002301-TA|BGIBMGA002301-PA|IPR009003|Peptidase,
trypsin-like serine and cysteine
         (186 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z97628-2|CAB10726.2|  427|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z81080-5|CAB03088.2|  427|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z81080-2|CAD56584.1|  358|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    27   8.2  
U40030-4|AAS80338.1|  909|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U40030-3|AAS80339.1|  911|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AF016451-12|AAB65998.1| 1443|Caenorhabditis elegans Hypothetical...    27   8.2  

>Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical
          protein F48F5.1 protein.
          Length = 1291

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 33 LDYLKIIKWSWIDIAIVKVESEYDFNDEKYTQLCSYKPAIIDVNYARKYQEPGTDALVLG 92
          +D  ++ KWS +++   KV    +F D+  T L S K   +    A K Q    +   L 
Sbjct: 1  MDQFQLRKWSLLNLGSAKVSDLINFKDDSITALVS-KLKEVRQGVAAKDQTTPMEKRALE 59

Query: 93 W 93
          W
Sbjct: 60 W 60


>Z97628-2|CAB10726.2|  427|Caenorhabditis elegans Hypothetical
           protein F39H2.2a protein.
          Length = 427

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 111 DTLNYAPIMLQNKEKCTEAYKDIERMNILIDNYMICAD 148
           D+L YA I   N + C +A+  ++  N+LID+  I  D
Sbjct: 280 DSLQYAFIEFDNAKSCEQAFFKMD--NVLIDDRRIHVD 315


>Z81080-5|CAB03088.2|  427|Caenorhabditis elegans Hypothetical
           protein F39H2.2a protein.
          Length = 427

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 111 DTLNYAPIMLQNKEKCTEAYKDIERMNILIDNYMICAD 148
           D+L YA I   N + C +A+  ++  N+LID+  I  D
Sbjct: 280 DSLQYAFIEFDNAKSCEQAFFKMD--NVLIDDRRIHVD 315


>Z81080-2|CAD56584.1|  358|Caenorhabditis elegans Hypothetical
           protein F39H2.2b protein.
          Length = 358

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 111 DTLNYAPIMLQNKEKCTEAYKDIERMNILIDNYMICAD 148
           D+L YA I   N + C +A+  ++  N+LID+  I  D
Sbjct: 211 DSLQYAFIEFDNAKSCEQAFFKMD--NVLIDDRRIHVD 246


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/72 (19%), Positives = 32/72 (44%)

Query: 87  DALVLGWGHKEKWRKPEDVSNYNQDTLNYAPIMLQNKEKCTEAYKDIERMNILIDNYMIC 146
           + +V+G+G         +    N  TL    + + + + C + ++ +  +++ I  Y IC
Sbjct: 157 NGVVIGYGLTLGEDSSGEPKLINSQTLQSTSVPIISDDDCVKTWRFLSLLSVKITGYQIC 216

Query: 147 ADGKGNINAKGE 158
           A    +  A G+
Sbjct: 217 AGAYLHGTAPGD 228


>U40030-4|AAS80338.1|  909|Caenorhabditis elegans Hypothetical
           protein T13C2.6a protein.
          Length = 909

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 133 IERMNILIDNYMICADGKGNINAKGEQILKGKPEADGCATNPENLKG 179
           IE   +       C DG  ++ ++ + I   KP ++GC   P  ++G
Sbjct: 366 IEMSKLCASAQFDCGDGNMSVCSQKKIIEMCKPSSEGCVCRPSFVRG 412


>U40030-3|AAS80339.1|  911|Caenorhabditis elegans Hypothetical
           protein T13C2.6b protein.
          Length = 911

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 133 IERMNILIDNYMICADGKGNINAKGEQILKGKPEADGCATNPENLKG 179
           IE   +       C DG  ++ ++ + I   KP ++GC   P  ++G
Sbjct: 368 IEMSKLCASAQFDCGDGNMSVCSQKKIIEMCKPSSEGCVCRPSFVRG 414


>AF016451-12|AAB65998.1| 1443|Caenorhabditis elegans Hypothetical
           protein C03A7.1 protein.
          Length = 1443

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 6   KPWTNSKIFEVIRQLKNAKVATESAYELDYLK 37
           K W ++ I  V++Q +  K+  E  Y  DY K
Sbjct: 952 KNWNSALILHVVQQQRLEKIGIEVLYSSDYSK 983


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.314    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,054,472
Number of Sequences: 27539
Number of extensions: 220559
Number of successful extensions: 373
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 369
Number of HSP's gapped (non-prelim): 8
length of query: 186
length of database: 12,573,161
effective HSP length: 77
effective length of query: 109
effective length of database: 10,452,658
effective search space: 1139339722
effective search space used: 1139339722
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)