GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002300-TA|BGIBMGA002300-PA|IPR000306|Zinc finger,
FYVE-type, IPR011011|Zinc finger, FYVE/PHD-type
         (1015 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       25   2.0  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    25   2.0  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    24   6.0  
AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochr...    24   6.0  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 560 ESEHESPVDSGVSTENTSLDRSPDSDQSKEIKGSLQN 596
           E   E   DSGV++ +     SP SD S++++ S Q+
Sbjct: 46  EPMDEDKNDSGVTSGSDFHSSSPSSDTSQDLQHSYQS 82


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 386  HDLVTSLNEQVTEIADRLSSIAASDVDIVDQMHSFS 421
            +  +   N QV E    +  I A D D VD++  FS
Sbjct: 1380 YSTIEEKNLQVNESGKLIHKIDAQDCDFVDEIEMFS 1415


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 567 VDSGVSTENTSLDRSPDSDQSKEIKGSLQN 596
           +DS  S E+T   RSP  D S+ ++   +N
Sbjct: 3   IDSKYSNEDTLGARSPGGDHSENMQDEPEN 32


>AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 126

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 783 FVCIAGVADQLQTNFAADLRNILK 806
           F+CI GV  ++Q     +LR+I +
Sbjct: 8   FICILGVYPEIQEKVYQELRDIFQ 31


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.129    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,112
Number of Sequences: 317
Number of extensions: 7660
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 5
length of query: 1015
length of database: 114,650
effective HSP length: 64
effective length of query: 951
effective length of database: 94,362
effective search space: 89738262
effective search space used: 89738262
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)