GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002300-TA|BGIBMGA002300-PA|IPR000306|Zinc finger,
FYVE-type, IPR011011|Zinc finger, FYVE/PHD-type
         (1015 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              24   7.2  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   9.5  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   9.5  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   9.5  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   9.5  

>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 7.2
 Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 721 NQSQSPLRLNLDHFVDESGTSCAGSECADDEQIALALQTQELAARQQARGKFKSSEDLI 779
           N ++  +R   + F+DE+G +   +EC+      LA+++ +L    +  GK+K+ ++++
Sbjct: 78  NFNEVVIREIAEIFLDENGVNKLITECSAISDADLAVKSAKLL---KCIGKYKTLKEML 133


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 9.5
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 4/33 (12%)

Query: 463 SHEPAVMSSLS----HNNSAVFNDETSEANDPL 491
           S EP ++SSLS    HNN+  +N   +  N  L
Sbjct: 76  SREPKIISSLSNNTIHNNNYKYNYNNNNYNKKL 108


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 9.5
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 4/33 (12%)

Query: 463 SHEPAVMSSLS----HNNSAVFNDETSEANDPL 491
           S EP ++SSLS    HNN+  +N   +  N  L
Sbjct: 76  SREPKIISSLSNNTIHNNNYKYNYNNNNYNKKL 108


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 9.5
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 4/33 (12%)

Query: 463 SHEPAVMSSLS----HNNSAVFNDETSEANDPL 491
           S EP ++SSLS    HNN+  +N   +  N  L
Sbjct: 76  SREPKIISSLSNNTIHNNNYKYNYNNNNYNKKL 108


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 9.5
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 4/33 (12%)

Query: 463 SHEPAVMSSLS----HNNSAVFNDETSEANDPL 491
           S EP ++SSLS    HNN+  +N   +  N  L
Sbjct: 76  SREPKIISSLSNNTIHNNNYKYNYNNNNYNKKL 108


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.129    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,520
Number of Sequences: 429
Number of extensions: 9613
Number of successful extensions: 56
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 5
length of query: 1015
length of database: 140,377
effective HSP length: 65
effective length of query: 950
effective length of database: 112,492
effective search space: 106867400
effective search space used: 106867400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)