GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002299-TA|BGIBMGA002299-PA|undefined
         (98 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    26   0.062
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    26   0.062
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   2.3  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    19   7.2  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 26.2 bits (55), Expect = 0.062
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query: 34  TESRDDHSLLAQFFFADDALNMVAAELDSFDGRKDPDRCSTLVN 77
           TES D+++   QF+ ++ + N VA   ++ +   D +  S L N
Sbjct: 471 TESSDNYNSFHQFYSSESSQNQVAPTGENSNSSSDFNFLSNLAN 514


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 26.2 bits (55), Expect = 0.062
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query: 34  TESRDDHSLLAQFFFADDALNMVAAELDSFDGRKDPDRCSTLVN 77
           TES D+++   QF+ ++ + N VA   ++ +   D +  S L N
Sbjct: 419 TESSDNYNSFHQFYSSESSQNQVAPTGENSNSSSDFNFLSNLAN 462


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 13  ADVRIELTTLGTTVGGAKYC 32
           AD R+E  T GT   G  +C
Sbjct: 607 ADDRVEQDTSGTCSDGDTFC 626


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
          protein.
          Length = 279

 Score = 19.4 bits (38), Expect = 7.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 19 LTTLGTTVGGAKYCTTESRDD 39
          L T+G      K+   ESRD+
Sbjct: 11 LLTIGLAAAARKHQKQESRDE 31


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,916
Number of Sequences: 317
Number of extensions: 642
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 98
length of database: 114,650
effective HSP length: 48
effective length of query: 50
effective length of database: 99,434
effective search space:  4971700
effective search space used:  4971700
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.1 bits)
S2: 37 (19.0 bits)