GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002299-TA|BGIBMGA002299-PA|undefined
         (98 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    25   2.1  
SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyce...    25   2.1  
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|...    24   5.0  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    23   8.7  

>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 13  ADVRIELTTLGTTVGGAKY--CTTESRDDHSLLAQFFFADDALNMVAAELDSFDGRKDPD 70
           A VR + T  G  VG  +   C  E + D     Q FFA+   +   A+ D+      P+
Sbjct: 437 AAVRAKDTLNGMMVGKKRIFVCFAERKSDRIRRLQAFFANKPTSEQTAQQDNKALFVKPE 496

Query: 71  RCSTL 75
           R ST+
Sbjct: 497 RSSTV 501


>SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 31  YCTTESRDDHSLLAQFFFADDALNMV 56
           Y T ESRD   ++A  FF D   N++
Sbjct: 247 YGTEESRDSFQVVATCFFIDTTKNIL 272


>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 403

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 64  DGRKDPDRCSTLVNQLRHAQVGFYFCIFIQGKD 96
           D RK+ D+   + + LR  QVG  + + +  +D
Sbjct: 354 DWRKNSDQLEVITDVLRDHQVGLSYVVKLMQED 386


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 8/29 (27%), Positives = 14/29 (48%)

Query: 67  KDPDRCSTLVNQLRHAQVGFYFCIFIQGK 95
           +D D C  L N++    +  Y C+   G+
Sbjct: 741 EDYDSCFALANEVASEDLKLYHCLIKSGR 769


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 420,873
Number of Sequences: 5004
Number of extensions: 13590
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 4
length of query: 98
length of database: 2,362,478
effective HSP length: 62
effective length of query: 36
effective length of database: 2,052,230
effective search space: 73880280
effective search space used: 73880280
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 47 (23.0 bits)