GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002299-TA|BGIBMGA002299-PA|undefined
         (98 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0201 - 15400953-15401080,15401787-15401882,15402252-154024...    28   1.0  
11_08_0023 + 27741775-27742475,27744163-27744413,27744557-277447...    27   2.4  
03_01_0440 - 3414811-3415884,3416000-3416037,3416807-3416966           27   3.1  
01_03_0134 + 12879254-12879596,12879689-12879796,12879905-128800...    25   7.2  
11_04_0172 - 14474674-14474761,14474842-14475012,14475090-144755...    25   9.5  
10_07_0113 - 12993300-12993413,12993493-12993775,12993856-129940...    25   9.5  
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893...    25   9.5  
02_05_0635 + 30518833-30520290                                         25   9.5  

>03_03_0201 -
          15400953-15401080,15401787-15401882,15402252-15402402,
          15404352-15404548,15404660-15404819
          Length = 243

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 40 HSLLAQFFFADDALNMVAAELDSFDGRKDPDRCSTLVNQLR 80
          +SLL +F F +++++M+  EL + D  K P R   ++ ++R
Sbjct: 36 NSLLKKFLFPEESIHMLTEELGAKDPLKAPTR-ENIMKEMR 75


>11_08_0023 +
           27741775-27742475,27744163-27744413,27744557-27744715,
           27744976-27745409,27745537-27746076
          Length = 694

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 64  DGRKDPDRCSTLVNQLRHAQVGFYFC 89
           D  K+PDRCST      H   G+Y+C
Sbjct: 320 DECKEPDRCST--GSRCHNTEGYYYC 343


>03_01_0440 - 3414811-3415884,3416000-3416037,3416807-3416966
          Length = 423

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)

Query: 5   TCSTHECLADVRIELTTLGTTVGGAKYCTTESRDDHSLLAQF 46
           T S HE +  V   L ++G   GG+K+C  E   DHS+   F
Sbjct: 340 TVSDHELVTGVT--LVSMG---GGSKFCVVECCLDHSVSVPF 376


>01_03_0134 +
           12879254-12879596,12879689-12879796,12879905-12880000,
           12880090-12880182,12880861-12880949,12881313-12881588,
           12881656-12881808
          Length = 385

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 28  GAKYCTTESRDDHSLLAQFFFADDALNMVAAELDSFDGRKD 68
           G  +  T +  D + L   F A+DA N +   LD F   KD
Sbjct: 162 GVGFSYTNTSSDLTKLNDGFVAEDAYNFLVNWLDRFPQYKD 202


>11_04_0172 -
           14474674-14474761,14474842-14475012,14475090-14475517,
           14478824-14478961,14479048-14479482,14479559-14479783,
           14479860-14480159
          Length = 594

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 50  DDALNMVAAELDSFDGRKDPDRCSTLVNQLRH 81
           +D  NMV    D    R+D D      NQLRH
Sbjct: 537 NDRANMVGYIKDCLFARQDKDFIMCAYNQLRH 568


>10_07_0113 -
           12993300-12993413,12993493-12993775,12993856-12994026,
           12994104-12994948,12995035-12995307,12995549-12995953
          Length = 696

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 39  DHSLLAQFFFADDALNMVAAELDSFDGRKDPDRCSTLVNQLRH 81
           D +++ +    +D  NMVA   D    R+D D      NQ RH
Sbjct: 525 DPAVVNETTLKNDRANMVAYIKDCLFARQDKDFIMCAYNQQRH 567


>08_01_0906 +
          8933230-8933797,8933894-8934543,8937956-8938615,
          8939751-8939817,8940421-8940724,8942993-8942996,
          8944539-8946449
          Length = 1387

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 12 LADVRIEL--TTLGTTVGGAKYCTTESRDDHSLLAQ-FFFADDALNMVAAELDSFDGRKD 68
          +AD+ + L  TT+  TV  A+    E    H  + +      D   M+ + L+   GR  
Sbjct: 1  MADLVLGLAKTTVEGTVTMARSAMEEEEKLHKTVQRDLLVISDEFEMMHSFLNDAKGRVT 60

Query: 69 PDRCSTLVNQLRHAQVGFYFCI 90
           +   TLV Q+R+  +    CI
Sbjct: 61 DNVTRTLVRQVRNTALDVEDCI 82


>02_05_0635 + 30518833-30520290
          Length = 485

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 57  AAELDSFDGRKDPDRCSTLVNQLRHAQVGFYFCIF 91
           AA L S +G K   R + +V  L  AQ G Y C++
Sbjct: 271 AAVLLSTNGAKARFRLARVVRTLTGAQDGAYHCVY 305


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,839,100
Number of Sequences: 37544
Number of extensions: 96245
Number of successful extensions: 216
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 210
Number of HSP's gapped (non-prelim): 8
length of query: 98
length of database: 14,793,348
effective HSP length: 71
effective length of query: 27
effective length of database: 12,127,724
effective search space: 327448548
effective search space used: 327448548
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 52 (25.0 bits)