GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002299-TA|BGIBMGA002299-PA|undefined
         (98 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8818| Best HMM Match : I-set (HMM E-Value=0)                        28   1.4  
SB_35323| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.6  
SB_38386| Best HMM Match : PALP (HMM E-Value=4.1e-10)                  26   5.6  
SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.6  
SB_34817| Best HMM Match : PP-binding (HMM E-Value=7.6)                25   7.5  
SB_57914| Best HMM Match : Ion_trans_2 (HMM E-Value=7.5e-07)           25   7.5  
SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.5  

>SB_8818| Best HMM Match : I-set (HMM E-Value=0)
          Length = 2787

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 67   KDPDRCSTLVNQLRHAQVGFYFCI 90
            +D DRCS ++  LR    G Y C+
Sbjct: 2370 EDGDRCSLIITNLRPEDAGTYKCV 2393


>SB_35323| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 51

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 67 KDPDRCSTLVNQLRHAQ 83
          KDPDRC   +NQL   Q
Sbjct: 27 KDPDRCKNQLNQLTSEQ 43


>SB_38386| Best HMM Match : PALP (HMM E-Value=4.1e-10)
          Length = 736

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/20 (65%), Positives = 15/20 (75%)

Query: 48  FADDALNMVAAELDSFDGRK 67
           F D+AL +VAA LD F GRK
Sbjct: 422 FKDNALVLVAAFLDFFLGRK 441


>SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2149

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/46 (36%), Positives = 21/46 (45%)

Query: 38   DDHSLLAQFFFADDALNMVAAELDSFDGRKDPDRCSTLVNQLRHAQ 83
            D   LL   +FADD   M  A++ SF+  K P     L   L  AQ
Sbjct: 1056 DSTELLKYKYFADDVSKMDIADIFSFEMSKVPYYNQRLKAMLFRAQ 1101


>SB_34817| Best HMM Match : PP-binding (HMM E-Value=7.6)
          Length = 170

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 67 KDPDRCSTLVNQLRHAQVGFYFCIFIQGKD 96
          ++P   + L NQLR AQV  +     +GKD
Sbjct: 11 ENPAGATNLANQLRQAQVDIFAMPVGEGKD 40


>SB_57914| Best HMM Match : Ion_trans_2 (HMM E-Value=7.5e-07)
          Length = 564

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 9   HECLADVRIELTTLGTTVGGAKYCTTESRDDHSLLAQFFF 48
           H C  D +   TT        K+C  ES DD  LLA   F
Sbjct: 277 HSCRRDDKANKTTSDKQKATKKHCQCESEDD-LLLADLNF 315


>SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1503

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 38  DDHSLLAQFFFADDALNMVAAELDSFDGRKDPDRCSTLVNQLRHA 82
           DD++ L QF  A   LN VA        RK+ ++C    +QL+ A
Sbjct: 248 DDNAALEQFMSALAVLNAVAVVFAEQIRRKE-EQCMVFRDQLKEA 291


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,319,298
Number of Sequences: 59808
Number of extensions: 110550
Number of successful extensions: 262
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 257
Number of HSP's gapped (non-prelim): 7
length of query: 98
length of database: 16,821,457
effective HSP length: 71
effective length of query: 27
effective length of database: 12,575,089
effective search space: 339527403
effective search space used: 339527403
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 52 (25.0 bits)