GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002299-TA|BGIBMGA002299-PA|undefined
         (98 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   1.2  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    19   8.4  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 1.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 2   SKQTCSTHECLADVRIELTTLGTTVGGAKYCTTESRDDHSLL 43
           +K+     + + +V  E T   TT G   Y TT +  ++S L
Sbjct: 696 AKKVKKDKDIILNVPKESTQSLTTTGNVSYLTTNNTSNNSQL 737


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
          protein protein.
          Length = 132

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 59 ELDSFDGRKDPDRCSTLVNQLRHAQVG 85
          E ++ DGRK    C+   N+L   Q G
Sbjct: 72 EEETVDGRKVKSVCTLDGNKLIQVQKG 98


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,671
Number of Sequences: 429
Number of extensions: 746
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 98
length of database: 140,377
effective HSP length: 49
effective length of query: 49
effective length of database: 119,356
effective search space:  5848444
effective search space used:  5848444
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.6 bits)
S2: 38 (19.4 bits)