GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002298-TA|BGIBMGA002298-PA|undefined
         (80 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   0.40 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   0.40 
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    20   2.8  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    20   2.8  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    20   2.8  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    20   3.7  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    19   4.9  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    19   6.5  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    19   6.5  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           19   6.5  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.0 bits (47), Expect = 0.40
 Identities = 10/28 (35%), Positives = 12/28 (42%)

Query: 29  QTQNNAASQPNNTALSALQNLQPWAGNQ 56
           Q  N     P NTA +    L PW  +Q
Sbjct: 212 QQPNQGQQPPGNTAAALPSPLYPWMRSQ 239


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.0 bits (47), Expect = 0.40
 Identities = 10/28 (35%), Positives = 12/28 (42%)

Query: 29  QTQNNAASQPNNTALSALQNLQPWAGNQ 56
           Q  N     P NTA +    L PW  +Q
Sbjct: 214 QQPNQGQQPPGNTAAALPSPLYPWMRSQ 241


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 20.2 bits (40), Expect = 2.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 19  PSAGLSALHYQTQNNAASQPNNTALSALQN 48
           PSAGL   H +  + ++++ NN    +  N
Sbjct: 107 PSAGLCGSHDEIPDISSTRGNNNNTPSATN 136


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
          ortholog protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 2.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 19 PSAGLSALHYQTQNNAASQPNNTALSALQN 48
          PSAGL   H +  + ++++ NN    +  N
Sbjct: 55 PSAGLCGSHDEIPDISSTRGNNNNTPSATN 84


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 20.2 bits (40), Expect = 2.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 19  PSAGLSALHYQTQNNAASQPNNTALSALQN 48
           PSAGL   H +  + ++++ NN    +  N
Sbjct: 238 PSAGLCGSHDEIPDISSTRGNNNNTPSATN 267


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 19.8 bits (39), Expect = 3.7
 Identities = 11/31 (35%), Positives = 12/31 (38%)

Query: 27  HYQTQNNAASQPNNTALSALQNLQPWAGNQG 57
           H Q  NN A     T  SA+    P   N G
Sbjct: 326 HMQAMNNMAGTYQMTGYSAMGMAAPHHQNFG 356


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax
          protein.
          Length = 456

 Score = 19.4 bits (38), Expect = 4.9
 Identities = 9/26 (34%), Positives = 10/26 (38%)

Query: 13 YIPEPPPSAGLSALHYQTQNNAASQP 38
          Y P      GL  LH+    N A  P
Sbjct: 26 YEPHVAHRPGLQGLHHSPHLNHAMHP 51


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 19.0 bits (37), Expect = 6.5
 Identities = 9/29 (31%), Positives = 10/29 (34%)

Query: 29  QTQNNAASQPNNTALSALQNLQPWAGNQG 57
           Q  NN  S   N+      N  PW    G
Sbjct: 148 QYDNNNFSAEENSVSEPPANFYPWMKAHG 176


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 19.0 bits (37), Expect = 6.5
 Identities = 9/29 (31%), Positives = 10/29 (34%)

Query: 29  QTQNNAASQPNNTALSALQNLQPWAGNQG 57
           Q  NN  S   N+      N  PW    G
Sbjct: 148 QYDNNNFSAEENSVSEPPANFYPWMKAHG 176


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 19.0 bits (37), Expect = 6.5
 Identities = 9/29 (31%), Positives = 10/29 (34%)

Query: 29  QTQNNAASQPNNTALSALQNLQPWAGNQG 57
           Q  NN  S   N+      N  PW    G
Sbjct: 148 QYDNNNFSAEENSVSEPPANFYPWMKAHG 176


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.308    0.120    0.351 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,053
Number of Sequences: 317
Number of extensions: 588
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 80
length of database: 114,650
effective HSP length: 46
effective length of query: 34
effective length of database: 100,068
effective search space:  3402312
effective search space used:  3402312
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.0 bits)
S2: 36 (18.6 bits)