Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002298-TA|BGIBMGA002298-PA|undefined
(80 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 0.55
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 0.55
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 1.3
SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ... 24 2.9
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 24 2.9
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 24 2.9
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb... 24 2.9
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 23 3.8
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 23 5.1
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 23 5.1
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 23 6.7
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 23 6.7
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 22 8.9
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase... 22 8.9
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 22 8.9
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 26.2 bits (55), Expect = 0.55
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 4 LQAEALSKGYIPEPP-PSAGLSALHYQTQNNAASQPNNTALSA 45
L+ ALS+G +PEPP P+ + ++ + + + T LS+
Sbjct: 796 LEVAALSRGSLPEPPKPNKQIVVQEEDQRDTLSLKTSTTGLSS 838
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 26.2 bits (55), Expect = 0.55
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 7 EALSKGYIPEPPPSAGLSALHYQTQNNAASQPNNTALSALQNLQPWA 53
E + G + +A ++A + QNN S+P N + L PWA
Sbjct: 1346 EQVESGKLTSAEGAAAIAATQTRNQNNFISKPFNVH-TLSTTLSPWA 1391
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.0 bits (52), Expect = 1.3
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 2 LSLQAEALSKGYIPEPPPSAGLSALHYQTQNNAASQPNNTALSALQNLQPWAGNQGSFMN 61
++L + + I EPP +GL A N + T ALQ+L W + F N
Sbjct: 28 IALDESSSNFSTIYEPPDLSGLDAEMIVIVKNLQKRDIVTKCRALQDLIQW-NDPSQFDN 86
Query: 62 AQTTN 66
Q N
Sbjct: 87 EQFLN 91
>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 23.8 bits (49), Expect = 2.9
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 11 KGYIPEPPPSAGLSALHYQTQNNAASQ 37
KGY P PP A +Y Q N Q
Sbjct: 10 KGYAPAPPQQAYGGPNYYPPQQNYPQQ 36
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 23.8 bits (49), Expect = 2.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 18 PPSAGLSALHYQTQNNAASQPNNTALSA 45
P S LS+ Q N + S+PNN ++SA
Sbjct: 1282 PYSVLLSSSTSQDLNESPSRPNNLSISA 1309
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 23.8 bits (49), Expect = 2.9
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 6 AEALSKGYIPEPPPSAGLSALHYQTQNNAASQPNNTALSALQNLQPWAG 54
A+ + P PPP S L TQ+N + AL+ + +AG
Sbjct: 1134 AKPAPANWYPVPPPGFNSSLLSRLTQSNQSKDKIIAALAKRNVYKSFAG 1182
>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 910
Score = 23.8 bits (49), Expect = 2.9
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 19 PSAGLSALHYQTQNNAASQPNNTALSALQNLQPW 52
P L LH NNA AL +++Q W
Sbjct: 737 PQMQLPLLHVSASNNAIWSAGEMALQLGKDMQQW 770
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 23.4 bits (48), Expect = 3.8
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 2 LSLQAEALSKGYIPEPPPSAGLSALHYQTQNNAASQPNNTALSALQNLQPW 52
LS A Y+P+ P+ + L + + QPN A+ L+++ W
Sbjct: 368 LSYYFSASGPMYVPQKCPATVYNNLLNFLEGSFHLQPNFLAMFTLESVSSW 418
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 23.0 bits (47), Expect = 5.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 35 ASQPNNTALSALQNLQPWAGNQGSFMNAQTTN 66
A+ PN T+ + + + QP S+ N +TN
Sbjct: 267 ANSPNITSSAGMTHAQPTHNPTSSYGNGASTN 298
>SPCC757.09c |rnc1||RNA-binding protein that suppresses
calcineurin deletion Rnc1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 398
Score = 23.0 bits (47), Expect = 5.1
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 6 AEALSKGYIPEPPPSAGLSALHYQT--QNNAASQPNNTA 42
A ++K IP P PS LS L + Q + +QP T+
Sbjct: 35 ATGIAKVSIPTPKPSTPLSTLTNGSTIQQSMTNQPEPTS 73
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 22.6 bits (46), Expect = 6.7
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 19 PSAGLSALHYQTQNNAASQPNNTALSALQNLQPWA 53
P AG +A N+ S+P++ +S+ +P+A
Sbjct: 127 PHAGKAAQSAHVMNSTESRPSSAHVSSSYTQKPFA 161
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 22.6 bits (46), Expect = 6.7
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 17 PPPSAG-LSALHYQTQNNAASQPNNTALSALQNLQPWAGNQGSFM 60
PPPS L + + T NN A+ + L W +F+
Sbjct: 99 PPPSPHFLKRISFDTFNNKAATDFSLTLKTQHQAYKWTRTSRTFL 143
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 22.2 bits (45), Expect = 8.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 10 SKGYIPEPPPSAGLSALHYQTQNNAASQPNNTALSALQ 47
S +IP PS SAL Q+ +A P + L+ Q
Sbjct: 397 SAQHIPRMSPSPSASALKTQSHVPSAKVPPTSKLNHAQ 434
>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 444
Score = 22.2 bits (45), Expect = 8.9
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 13 YIPEPPPSAGLSALHYQTQNNAASQPNNTALSALQNLQPWAGNQG 57
Y+ S GL+A H + A PN+T +N P G
Sbjct: 20 YVAIAASSIGLAAYHIRKDAIALDIPNSTYQHVSKNRVPPTDGDG 64
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 22.2 bits (45), Expect = 8.9
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 17 PPPSAGLSALHYQTQNNAASQPNNTA 42
P + L +H Q +N A S P A
Sbjct: 3 PSQHSSLKDIHRQLENTAISNPTENA 28
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.308 0.120 0.351
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 315,772
Number of Sequences: 5004
Number of extensions: 9949
Number of successful extensions: 24
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 15
length of query: 80
length of database: 2,362,478
effective HSP length: 59
effective length of query: 21
effective length of database: 2,067,242
effective search space: 43412082
effective search space used: 43412082
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 45 (22.2 bits)
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