GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002298-TA|BGIBMGA002298-PA|undefined
         (80 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.1  
SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.8  
SB_35563| Best HMM Match : Keratin_B2 (HMM E-Value=3.3)                26   4.9  
SB_50931| Best HMM Match : Extensin_2 (HMM E-Value=0.14)               25   6.4  
SB_43484| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.4  
SB_11384| Best HMM Match : DUF1409 (HMM E-Value=4.7)                   25   6.4  
SB_50357| Best HMM Match : Toxin_8 (HMM E-Value=2.4)                   25   6.4  

>SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1259

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 15  PEPPPSAGLSALHYQTQNNAASQPNNTALS---ALQNLQPWAGNQG 57
           P PPP       +Y    N+  Q ++ A++   A  N   W G  G
Sbjct: 361 PTPPPQTAPQGSNYTATYNSVKQTSSAAVTSTGAYMNTTGWTGGAG 406


>SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1758

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 13  YIPEPPPSAGLSALHYQTQNNA 34
           Y+PE PP   L  LH +++N+A
Sbjct: 572 YLPEVPPWLRLDTLHLRSRNSA 593


>SB_35563| Best HMM Match : Keratin_B2 (HMM E-Value=3.3)
          Length = 138

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 3/26 (11%)

Query: 16  EPPPSAGLSALH---YQTQNNAASQP 38
           EPPPSA L A H   Y  ++  A+QP
Sbjct: 83  EPPPSAPLDATHPLPYTIRSAGAAQP 108


>SB_50931| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
          Length = 348

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 15  PEPP-PSAGLSALHYQTQNNAASQPNNTALS 44
           P PP  S  L  LHYQ  N A+S   + A++
Sbjct: 189 PTPPLVSTALPKLHYQAANVASSSNKSKAIT 219


>SB_43484| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 38 PNNTALSALQNLQPWAGNQGSFMN 61
          PNNTA  A++++  W    G FMN
Sbjct: 61 PNNTAAGAMKSVMVWIYG-GGFMN 83


>SB_11384| Best HMM Match : DUF1409 (HMM E-Value=4.7)
          Length = 225

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 16/59 (27%), Positives = 27/59 (45%)

Query: 1  MLSLQAEALSKGYIPEPPPSAGLSALHYQTQNNAASQPNNTALSALQNLQPWAGNQGSF 59
          +L+     + +G  P P   AGL+AL  + + +  +     A   L+ L+ W G Q  F
Sbjct: 37 LLASLDSCILEGSEPLPRDGAGLAALAERKRGDWTAHAERLAKLTLEVLKLWHGLQKRF 95


>SB_50357| Best HMM Match : Toxin_8 (HMM E-Value=2.4)
          Length = 304

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 2   LSLQAEALSKGYIPEPPPSAGLSALHYQTQNNAASQPNNT-ALSALQNLQP 51
           LSL+ E+ +K + P PP +      H +      SQ + + A    QN  P
Sbjct: 108 LSLEKESCNKSFTPRPPSTPPSPRKHSRPCRPTRSQSSTSRARPVFQNNNP 158


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.308    0.120    0.351 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,321,761
Number of Sequences: 59808
Number of extensions: 69566
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 7
length of query: 80
length of database: 16,821,457
effective HSP length: 58
effective length of query: 22
effective length of database: 13,352,593
effective search space: 293757046
effective search space used: 293757046
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 52 (25.0 bits)