GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002298-TA|BGIBMGA002298-PA|undefined
         (80 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   1.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   4.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    19   5.7  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    19   7.6  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 1.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 23  LSALHYQTQNNAASQPN 39
           +S LH+Q  +N+ + PN
Sbjct: 298 MSDLHWQLPHNSTNPPN 314


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 4.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 15   PEPPPSAGLSAL 26
            P PPPS+G + L
Sbjct: 1358 PPPPPSSGQAYL 1369


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 19.4 bits (38), Expect = 5.7
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 20  SAGLSALHYQTQNNAASQPNNTALSALQNLQPWAGNQGSFMNAQTTN 66
           S GLS          A Q N   L++  N+   +GN  +  +A+ ++
Sbjct: 509 SLGLSTATSTCSLAVAKQQNQVPLTSSSNVNNNSGNGNTNSSARDSS 555


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 19.0 bits (37), Expect = 7.6
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 9   LSKGYIPEPPPSAGLSALHYQTQNNAASQP 38
           L+  ++P  PP   + AL +    N+A  P
Sbjct: 327 LATPFVPVEPPDILMPALTWLGWINSAINP 356


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.308    0.120    0.351 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,039
Number of Sequences: 429
Number of extensions: 655
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 80
length of database: 140,377
effective HSP length: 47
effective length of query: 33
effective length of database: 120,214
effective search space:  3967062
effective search space used:  3967062
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.0 bits)
S2: 36 (18.6 bits)