Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002297-TA|BGIBMGA002297-PA|undefined
(186 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 30 0.18
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 1.7
SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo... 27 2.2
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo... 27 2.2
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 26 3.0
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 26 3.9
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 5.2
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ... 25 5.2
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 25 9.1
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 25 9.1
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 25 9.1
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 30.3 bits (65), Expect = 0.18
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 47 SPNDHMTETQPRVNLPF-SISRLLGKQFEDIDKRRNSGESDDRS 89
SPN H T + N + S+S L+G + EDI + +S D S
Sbjct: 364 SPNSHNTSDNEQNNEDYVSVSSLVGSETEDITYSKELSQSSDSS 407
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.1 bits (57), Expect = 1.7
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Query: 3 SVHSDDDQEEINVDSDSRLSGH-CDRSIASEDRDSEHSYHER-FRDSPNDHMTETQPRVN 60
S D D + DS+S S D S +S +SE S + S +D +E+ +
Sbjct: 193 SSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDS 252
Query: 61 LPFSISRLLGKQ--FEDIDKRRNSGESDDRSDQDT 93
S S + +D D NS +S+D S D+
Sbjct: 253 DSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDS 287
Score = 25.0 bits (52), Expect = 6.8
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Query: 3 SVHSDDDQEEINVDSDSRLSGH-CDRSIASEDRDSEHSYH-ERFRDSPNDHMTETQPRVN 60
S D+D + DS+S S D S +S D +SE S S + +E+ N
Sbjct: 121 SSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDN 180
Query: 61 LPFSISRLLGKQFEDIDKRRNSGESDDRSDQDT 93
S S + D +S SD S+ +
Sbjct: 181 DSSSSSSDSESESSSEDSDSSSSSSDSESESSS 213
Score = 25.0 bits (52), Expect = 6.8
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Query: 3 SVHSDDDQEEINVDSDSRLSGH-CDRSIASEDRDSEHSYH-ERFRDSPNDHMTETQPRVN 60
S D+D + DS+S S D S +S D +SE S S + +E+ N
Sbjct: 175 SSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDN 234
Query: 61 LPFSISRLLGKQFEDIDKRRNSGESDDRSDQDT 93
S S + D +S SD S+ +
Sbjct: 235 DSSSSSSDSESESSSEDSDSSSSSSDSESESSS 267
>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
Agn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 14 NVDSDSRLSGHCDRSIASEDRDSEHSYHERFRDSPN 49
+V SD +L D SI S D D RF D PN
Sbjct: 79 SVSSDFKLFISFDMSIISADADFIEGVVRRFADKPN 114
>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 14 NVDSDSRLSGHCDRSIASEDRDSEHSYHERFRDSP 48
N SD R S CD D D E ++ +F DSP
Sbjct: 241 NDSSDIRFSSRCDLFADDADSDWEQDFNVKF-DSP 274
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 26.2 bits (55), Expect = 3.0
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 7 DDDQEEINVDSDSRLSGHCDRSIASEDRDSEHSYHERFRDSPNDHMTETQPRVNLPFSIS 66
DDD ++ +SRLS R+ +D D +H R R S + ++ R P +
Sbjct: 165 DDDDDDRAPYEESRLSRAPSRASRYDDDDRDHRSRRRSR-SRRPGRSRSRRRSRRPSPSA 223
Query: 67 RLLGKQFEDIDKRRNSGESDDRSDQD 92
+ D + +R ES ++++D
Sbjct: 224 EHNSAEENDPELQRVIEESKRQAEED 249
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 35 DSEHSYHERFRDSPNDHMTETQPRVNLPFSISRLLGKQFEDIDKRRNSGES 85
+S S+H RF+ S T + PF I+ + + + + +S +S
Sbjct: 127 ESVVSHHSRFQFSLTPSTTPPPSSASAPFPINSNISNSLDSVSQHNSSADS 177
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 5.2
Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 2 SSVHSDDDQEEINVDSDSRLSGHCDRSIASE--------DRDSEHSYHERFRDSPNDHMT 53
++++ DDD EE+ + D+ D S A E +DS S +E DS ++
Sbjct: 3925 NTLNEDDDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENEN-SDSEEENQD 3983
Query: 54 ETQPRVNLPFSISRLLGKQFEDIDKRRNSGESDDRSDQDT 93
+ ++P +S L ++ D + E++ +S++ +
Sbjct: 3984 LDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQS 4023
>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 58 RVNLPFSISRLLGKQFEDIDKRRNSGE 84
R ++P+ IS FEDI+K GE
Sbjct: 128 REHIPYIISTASATSFEDIEKASGPGE 154
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 24.6 bits (51), Expect = 9.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 38 HSYHERFRDSPNDHMTETQPRVNLPFSISRLL 69
H++ + +H T T P+ PFS+S +L
Sbjct: 657 HAFCSNCMEPFYEHKTSTCPQCETPFSVSDIL 688
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 24.6 bits (51), Expect = 9.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 34 RDSEHSYHERFRDSPN 49
+D HSYH RF+ S N
Sbjct: 96 KDDSHSYHVRFQHSIN 111
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 24.6 bits (51), Expect = 9.1
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 10 QEEINVDSDSRLSGHCDRSIASEDRDSEHSYHERFR-DSPNDHMTETQPRVNLPFSISRL 68
+ E + D H DR +SE S HE F S N+ ET N SI ++
Sbjct: 50 KSESSADELEERDAHLDRFRRDSTFESETSDHEDFSGGSENELDEETTKNAN---SIKKI 106
Query: 69 LGKQFEDIDKRRNS 82
E+++K+R +
Sbjct: 107 ---SLEEVEKQRKA 117
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.129 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 662,421
Number of Sequences: 5004
Number of extensions: 22881
Number of successful extensions: 55
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 45
Number of HSP's gapped (non-prelim): 15
length of query: 186
length of database: 2,362,478
effective HSP length: 69
effective length of query: 117
effective length of database: 2,017,202
effective search space: 236012634
effective search space used: 236012634
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)
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