Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002297-TA|BGIBMGA002297-PA|undefined
(186 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0171 + 41683670-41683872,41684386-41684483,41684614-416846... 32 0.32
09_01_0128 + 1932721-1935181,1936099-1936256 31 0.57
08_02_0259 - 14974526-14974572,14974670-14974742,14974829-149748... 30 0.99
09_01_0019 + 403078-404211 29 1.7
02_04_0597 - 24198112-24198462,24199249-24199389,24200322-242005... 29 2.3
03_06_0146 - 31976538-31978643,31978653-31978751 28 4.0
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 28 4.0
07_03_1794 - 29580767-29584189 28 5.3
03_03_0278 - 16126803-16129049 28 5.3
03_02_0715 + 10621789-10623243,10624074-10625018 28 5.3
09_02_0539 - 10408398-10409552 27 7.0
05_03_0368 - 13127536-13128429 27 7.0
10_01_0139 - 1660382-1660729,1660826-1661008,1662122-1663057,166... 27 9.2
08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151 27 9.2
07_01_0699 - 5276790-5278826 27 9.2
>01_07_0171 +
41683670-41683872,41684386-41684483,41684614-41684692,
41684845-41685000,41685021-41685146,41686249-41686540,
41686978-41687053,41687295-41687392,41687523-41687665,
41688522-41688579,41689055-41689213,41689291-41689343,
41689978-41690212,41690317-41690403,41690607-41690711
Length = 655
Score = 31.9 bits (69), Expect = 0.32
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 10 QEEINVDSDSRLSGHCDRSIASEDRDSEHSYHERF 44
QE +N +SD R + +C I D DSE Y E +
Sbjct: 306 QESLNYNSDVRTAENCAEEIILSDSDSEELYTENY 340
>09_01_0128 + 1932721-1935181,1936099-1936256
Length = 872
Score = 31.1 bits (67), Expect = 0.57
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 4 VHSDDDQEEINVDSDSRLSG--HCDRSIASEDRDSEHSYHERFRDSPNDHMTETQPR 58
+H +D QE+ + + +G H E+ D+E + ++ R S + ET+P+
Sbjct: 223 IHEEDMQEDDEAAEEEKCNGNNHVQNDARPEENDTEQMHIKQNRSSEEKYREETRPK 279
>08_02_0259 -
14974526-14974572,14974670-14974742,14974829-14974891,
14975030-14975097,14975172-14975295,14976434-14976493,
14976744-14976806,14976902-14977942,14978027-14978093,
14978188-14978303,14978454-14978540,14978749-14978838,
14979128-14979214,14979366-14979428,14979509-14979566,
14980174-14980231,14980349-14980416,14980508-14980587,
14981084-14981147,14981321-14981392,14981517-14981576,
14982344-14982398,14982487-14982520,14983845-14983931,
14984036-14984122,14984211-14984408,14984509-14984639,
14984739-14984838
Length = 1066
Score = 30.3 bits (65), Expect = 0.99
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 6 SDDDQEEINVDSDSRLSGHCDRSIASEDRDSEHSYHERFRDSPNDHMTETQPRVNLPFSI 65
+DDD+ +I DS + + +D + ER RD E R +
Sbjct: 140 NDDDETKIKQDSGRNVKRRTEEVDDEDDGNDTDEEQERIRDQQERAQLEKNMRERDAANT 199
Query: 66 SRLLGKQF-----EDIDKRRNSGESDDRSD 90
+L+ +Q E+I +R + + +D SD
Sbjct: 200 RKLMERQLSKEEQEEITRRSQAMDKNDTSD 229
>09_01_0019 + 403078-404211
Length = 377
Score = 29.5 bits (63), Expect = 1.7
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 2 SSVHSDDDQEEINVDSDSRLSGHCDRSIASEDRDSEHSYHERFRDSPND-HMTETQPRVN 60
S +DD+E+ + SDS + +R IA +R H R + H + ++ R
Sbjct: 170 SDDEDEDDEEDSDDSSDSDIDPELERIIAERERAKSGRKHSRDEEKKTSRHRSSSRGRSK 229
Query: 61 LPFSISRL-----LGKQFEDIDKRRNSGESDDRSDQDT 93
S R L ++ K+++ + +RSD+D+
Sbjct: 230 HRRSTKRSDTEDDLEEERSKDKKKKSRRKRHERSDEDS 267
>02_04_0597 -
24198112-24198462,24199249-24199389,24200322-24200537,
24200626-24201561,24201655-24201816,24202026-24202304,
24202399-24203171,24206142-24207363
Length = 1359
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 6 SDDDQEEINVDSDSRLSGHCDRSIASEDRDSEHSYHERFRDSPNDHMTETQPRVNL 61
SDDDQ++++ D D + ++ ++ D + R S TQP+V L
Sbjct: 425 SDDDQDDLSTDPDDFIESEDSEDMSGDEEDMFRNLLSRAGFSLTYGENYTQPQVTL 480
>03_06_0146 - 31976538-31978643,31978653-31978751
Length = 734
Score = 28.3 bits (60), Expect = 4.0
Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 1/91 (1%)
Query: 2 SSVHSDDDQEEINVDSDSRLSGHCDRSIASEDRDSEHSYHERFRDSPNDHMTETQPRVNL 61
S +++ EE + + + D +E D E Y E D D + +NL
Sbjct: 204 SDEYTESTDEESDYEEEDTTDLESDSDEDTESTDEESDYEEEIDDEEIDD-ESVEEDINL 262
Query: 62 PFSISRLLGKQFEDIDKRRNSGESDDRSDQD 92
+ F D D + E D D D
Sbjct: 263 DDELMGFASGLFGDDDTESSHDEEDLDDDDD 293
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/83 (21%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 14 NVDSDSRLSGHCDRSIAS----EDRDSEHSY-HERFRDSPNDHMTETQPRVNLPFSISRL 68
NV D+ L + + S AS +D ++ +Y + ++ + H+ + + N S +
Sbjct: 795 NVQRDASLRKNIEESSASLDGADDEKNDMAYCGMKEANTMSLHVETMEEKTNFTPEKSSV 854
Query: 69 LGKQFEDIDKRRNSGESDDRSDQ 91
GK + + +K + GE ++++D+
Sbjct: 855 PGKNYTEFEKLNDEGEEEEQNDK 877
>07_03_1794 - 29580767-29584189
Length = 1140
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 25 CDRSIASEDRDSEHSYHERFRDSP-------NDHMTETQPRVNLPFS-ISRLLGKQFEDI 76
C RS E+ S SYH +F+ P + + T+P+ F+ I+ L KQF D+
Sbjct: 1081 CRRSSLVEEESSSTSYHSQFKHFPTRTRVPLRNFLFGTKPKKKSIFACINPTLQKQFSDL 1140
>03_03_0278 - 16126803-16129049
Length = 748
Score = 27.9 bits (59), Expect = 5.3
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 22 SGHCDRSIASEDRDSEHSYHERFRDSPNDHMTETQPRVNLPFSISRLLGKQFEDIDKRRN 81
SG D S+AS+D + + H D+ + + T+ + P S + + F D DK R
Sbjct: 463 SGGDDESLASDDSTARQAAHVDPEDNASVNSTDADDENDDPLSYN-VPDPDFHDFDKDRT 521
Query: 82 SGESDDRSDQ 91
E +SDQ
Sbjct: 522 --EECFQSDQ 529
>03_02_0715 + 10621789-10623243,10624074-10625018
Length = 799
Score = 27.9 bits (59), Expect = 5.3
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 7 DDDQEEINVDSDSRLSGHCDRSI-ASEDRDSEHSYHERFRDSPNDHMTETQPRVNLPFSI 65
DDD EE V+ D CD + AS + E + + D + PR P
Sbjct: 28 DDDDEEYVVEEDE--EEECDEDLSASSAGEGGEGTDEEYEEGDEDEEEDETPRPRQPVK- 84
Query: 66 SRLLGKQFE-----DIDKRRNSGESDDRSDQD 92
SR G++ + +RR + DD S+++
Sbjct: 85 SRENGRKGKADPPVARSRRRKYEDDDDYSEEE 116
>09_02_0539 - 10408398-10409552
Length = 384
Score = 27.5 bits (58), Expect = 7.0
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 1 MSSVHSDDDQEEINVDSDSRLSGHCDRSIASEDRDS-EHSYHERFRDSPNDHMTET 55
MS SDDDQ+ D +S + + AS+D +S E + + S ND+ +T
Sbjct: 30 MSLEESDDDQDNEESGDDEDVSDEDEFTEASDDEESMEETDDDETDASSNDNDDDT 85
>05_03_0368 - 13127536-13128429
Length = 297
Score = 27.5 bits (58), Expect = 7.0
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Query: 6 SDDDQEEINVDSDSRLSGHCDRSIASEDRDSEHSYHERFRDSPNDHMTETQPRVNLPFSI 65
++DD+E+ SDS + +R IA + + S R + + T Q R + S
Sbjct: 153 AEDDEEDSYDSSDSDIDPELERIIAKRELHKDGSKQSR-EEEKKEKKTSRQRRSSRGRSK 211
Query: 66 SRLLGKQFEDIDKRRNSGESDDRSDQDT 93
R + + RR E D +T
Sbjct: 212 HRRSSSKEDKKKSRRKRRERSCEEDSET 239
>10_01_0139 -
1660382-1660729,1660826-1661008,1662122-1663057,
1667929-1668084,1669081-1669971
Length = 837
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 5 HSDDDQEEINVDSDSRLSGHCDRSIASEDRDSEHSYHERFRDSPND 50
+ D+D+++ +++SD+ + + ED D + E D D
Sbjct: 779 YEDNDEDQFHIESDNMVGFELEDEDEDEDEDEDEDEDEDDEDEDGD 824
>08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151
Length = 124
Score = 27.1 bits (57), Expect = 9.2
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 1 MSSVHSDDDQEEINVDSDSRLSG-----HCDRSIASEDRDSEHSYHERFRDSPNDHMTET 55
++ D D ++ VD D G HCDR ASE EH Y + M+
Sbjct: 40 LADAGKDADATQLPVDEDLPGMGQFYCLHCDRYFASESVKEEH-YRSKRHKKRIKQMSGP 98
Query: 56 QPRVNLPFSISRLLG 70
P L ++ +G
Sbjct: 99 APHTQLDAELAAGMG 113
>07_01_0699 - 5276790-5278826
Length = 678
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 20 RLSGHCDRSIASEDRDSEHSYHERFRDSPNDHMTET 55
R SGH + D S H H R R +P M ET
Sbjct: 160 RFSGHGKKRKREPDSQSAHDEHGRARCAPQIAMPET 195
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.129 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,189,900
Number of Sequences: 37544
Number of extensions: 146172
Number of successful extensions: 356
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 350
Number of HSP's gapped (non-prelim): 19
length of query: 186
length of database: 14,793,348
effective HSP length: 78
effective length of query: 108
effective length of database: 11,864,916
effective search space: 1281410928
effective search space used: 1281410928
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)
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