GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002297-TA|BGIBMGA002297-PA|undefined
         (186 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23511-12|AAC46798.2|  610|Caenorhabditis elegans Hypothetical p...    28   4.7  
AL034393-6|CAA22321.1|  507|Caenorhabditis elegans Hypothetical ...    28   4.7  
AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    27   8.2  
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    27   8.2  
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Hypothetical ...    27   8.2  
AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical ...    27   8.2  

>U23511-12|AAC46798.2|  610|Caenorhabditis elegans Hypothetical
           protein C32D5.10 protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 4   VHSDDDQEEINVDSDSRLSGHCDRSIASEDRDSEHSYHERFRD 46
           +  DDD + ++VD D R      R+ ++ + DS+       RD
Sbjct: 450 IDDDDDNDGVDVDDDDREDSDEPRTYSNSEEDSDEEIQVVERD 492


>AL034393-6|CAA22321.1|  507|Caenorhabditis elegans Hypothetical
           protein Y18D10A.8 protein.
          Length = 507

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 7   DDDQEEINVD--SDSRLSGHC-DRSIASEDRDSEHSY-HERFRDSPNDHMTETQPRVNLP 62
           DDD E+I ++  SD +L+ HC D  + +  +++  +Y   R R S  +   + + R ++P
Sbjct: 354 DDDDEDIKLEQTSDGKLTFHCDDPELLAAAQEALSAYLRVRARPSAEEREKKKERRKSMP 413


>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/50 (28%), Positives = 22/50 (44%)

Query: 10  QEEINVDSDSRLSGHCDRSIASEDRDSEHSYHERFRDSPNDHMTETQPRV 59
           +EE N     R + H  R    + RD+    H   + S + H  ET+ R+
Sbjct: 684 EEEYNTRHLKRTTEHPHRKQPPQKRDNTKDQHRGGKKSSHHHSRETKHRI 733


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/50 (28%), Positives = 22/50 (44%)

Query: 10  QEEINVDSDSRLSGHCDRSIASEDRDSEHSYHERFRDSPNDHMTETQPRV 59
           +EE N     R + H  R    + RD+    H   + S + H  ET+ R+
Sbjct: 906 EEEYNTRHLKRTTEHPHRKQPPQKRDNTKDQHRGGKKSSHHHSRETKHRI 955


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Hypothetical
            protein Y67D8C.5 protein.
          Length = 4177

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 3/88 (3%)

Query: 7    DDDQEEINVDSDSRLSGHCDRSIASEDRDSEHSYHERFRDSPNDHMTETQPR--VNLPFS 64
            +DD+E+ + D +   +   D     ED + +    +   ++ +D   E   R     P  
Sbjct: 2459 EDDEEDEDGDQNEHEAEEDDHDREDEDDEDDDDDEDEEEEAEDDDQDEDDVRHVEQNPEP 2518

Query: 65   ISRLLGKQFEDIDKRRNSGESDDRSDQD 92
            ++R L ++ +D D+  + G+ D  S +D
Sbjct: 2519 LARRLFEE-DDDDEEDDDGDEDGDSMED 2545


>AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.3 protein.
          Length = 679

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 6   SDDDQEEINVDSDSRLSGHCDRSIASEDRDSEHSYHERFRDSPNDHMTETQ 56
           SDD+ EE   +  S+ S       +SED + E S  +R + S  +   E Q
Sbjct: 285 SDDEDEEEKPEKRSKKSKKAVIDSSSEDEEEEKSSKKRSKKSKKESDEEQQ 335


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.313    0.129    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,627,581
Number of Sequences: 27539
Number of extensions: 130514
Number of successful extensions: 376
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 6
length of query: 186
length of database: 12,573,161
effective HSP length: 77
effective length of query: 109
effective length of database: 10,452,658
effective search space: 1139339722
effective search space used: 1139339722
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)