GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002296-TA|BGIBMGA002296-PA|undefined
         (199 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    28   1.1  
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    26   4.4  
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac...    25   5.8  
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    25   5.8  

>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 147 VLSALAQMSLG-GSGDGDAEDKPRLLAVEPAPPRQ 180
           V SA+A MSL   SG+    ++PR L   PAP +Q
Sbjct: 79  VASAVAAMSLSQNSGEKRTPEEPRKLPGVPAPQKQ 113


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/47 (29%), Positives = 19/47 (40%)

Query: 54  GEDGKPGKPXXXXXXXXXXTKSAGKEPREGDAKPRRPKRQRPVIDFS 100
           GEDGKP              K   ++ RE      + KR+   ID+S
Sbjct: 26  GEDGKPLSKKALKKLEKEREKEQKRKEREAREAEEKKKREANEIDYS 72


>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
           Hba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 10/67 (14%)

Query: 73  TKSAGKEPREGDAKPRRPKRQRPVID----FSVKISNISP-----NTRVRDLKQALSERG 123
           TK+A +E +  + K    KR+    +     S K+S   P     N  V++ K+     G
Sbjct: 15  TKNALEE-KSNETKDETSKRKHDPAEEESAVSTKVSKSEPLEDKGNAEVKEFKETTKSNG 73

Query: 124 VKPQIMV 130
           VKP++ +
Sbjct: 74  VKPEVEI 80


>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 133 GEGDSGVSAVSME-GVLSALAQMSLGGSGDGDA 164
           G G  G++  SM  G +S +A M +GG G G A
Sbjct: 468 GGGMPGLNPGSMNFGDISKMANMLMGGGGPGGA 500


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.308    0.129    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 765,564
Number of Sequences: 5004
Number of extensions: 27180
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 58
Number of HSP's gapped (non-prelim): 4
length of query: 199
length of database: 2,362,478
effective HSP length: 69
effective length of query: 130
effective length of database: 2,017,202
effective search space: 262236260
effective search space used: 262236260
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 52 (25.0 bits)