GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002296-TA|BGIBMGA002296-PA|undefined
         (199 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1963| Best HMM Match : rve (HMM E-Value=0.022)                      31   0.85 
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_47240| Best HMM Match : Pkinase_C (HMM E-Value=2.8e-06)             29   2.6  
SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_18357| Best HMM Match : Phage_integrase (HMM E-Value=0.0063)        29   3.4  
SB_24696| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00023)          28   4.5  
SB_6007| Best HMM Match : PDEase_I (HMM E-Value=0)                     28   4.5  
SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31)               28   6.0  
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)                  28   6.0  
SB_6496| Best HMM Match : Collagen (HMM E-Value=0)                     28   6.0  
SB_1089| Best HMM Match : AbfB (HMM E-Value=0.034)                     28   6.0  
SB_47118| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_15078| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_35452| Best HMM Match : UK (HMM E-Value=5.7)                        27   7.9  

>SB_1963| Best HMM Match : rve (HMM E-Value=0.022)
          Length = 931

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 91  KRQRPVIDFSVKISNISPNTRVRDLKQALSERGVKPQIMVWKGEGDSGVSAVS--MEGVL 148
           +R+ P    ++ ++ IS N  + D++  L+ R V            S  S+ S      +
Sbjct: 89  ERELPAAIDAINLATISANRAIEDIESKLASR-VDEASSETSSVASSNTSSKSGTPSRKV 147

Query: 149 SALAQMSLGGSGDGDAEDKPRLLAVEPAPP 178
            A  + S G +G G A    R   V+P PP
Sbjct: 148 KAPRKRSTGNAGRGGASQSVRRSRVDPEPP 177


>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 871

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 8/99 (8%)

Query: 34  YARTEESQRGGGILNGNTTEGED-----GKPGKPXXXXXXXXXXTKSAGKEPREGDAKPR 88
           YA  EE+++G    NG   EG +     G PG+              AG         P 
Sbjct: 254 YATAEEAEKGQRAHNGRQVEGSNIRVAYGSPGRTGASILGSQLDNTQAGYTTVPQPMDPP 313

Query: 89  RP-KRQRPVIDFSVKISNISPNTRVRDLKQALSERGVKP 126
           +P    +PV   +V+   +   T +R    A+ ERG KP
Sbjct: 314 QPLMAAQPVPPLNVEPRGLH-MTHMRH-AMAIGERGEKP 350


>SB_47240| Best HMM Match : Pkinase_C (HMM E-Value=2.8e-06)
          Length = 619

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 91  KRQRPVIDFSVKISNISPNTRVRDLKQALSERGVKPQIMVWKGEGDSGVSAVSMEGVLSA 150
           K Q  ++D   ++  +  + +  + K A   R  + ++ VW+      V  +SM  +L+ 
Sbjct: 380 KAQNKIMDLEDQLFKLQRSQKKLE-KDASERRAAEDKLQVWEMNFQGVVGRLSMT-MLTM 437

Query: 151 LAQMSLGGSG-DGDAED 166
           +  M  GG G DG  +D
Sbjct: 438 ILMMGCGGGGVDGHDDD 454


>SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 11  HAEGGGYGCGGTHRAASEKG-AATYARTEESQRGGGILNGN 50
           H  GGGYG GG HR  S  G   +Y      Q  GG   G+
Sbjct: 782 HRGGGGYG-GGGHRGGSYSGYRGSYKSGGYGQGSGGYGQGS 821


>SB_18357| Best HMM Match : Phage_integrase (HMM E-Value=0.0063)
          Length = 683

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 10  LHAEGGGYGCGGTHRAASEKGAATYARTEESQRGGGILNGNTTEGEDGKPGKPXXXXXXX 69
           L+++   +  GG H       A T    +ES+R  G++ G    G  G  G+        
Sbjct: 181 LYSDASNFAWGGCHFVPGMPKAETRGYWDESERKPGVI-GTKVSGNQGLLGRKRAEATNR 239

Query: 70  XXXTKSAGKEPRE 82
              + S+   P E
Sbjct: 240 RKGSSSSPWNPEE 252


>SB_24696| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00023)
          Length = 547

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 14  GGGYGCGGTHRAASEKGAATYARTEESQRGGGILNGN 50
           GG  G  G    A+E GAA+  R   S+ GG   NGN
Sbjct: 256 GGSSGFKGVDGQATENGAASKGRLSYSRAGGS--NGN 290


>SB_6007| Best HMM Match : PDEase_I (HMM E-Value=0)
          Length = 511

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 40  SQRGGGILNGNTTEGEDGKPGKPXXXXXXXXXXTKSAGKEPREGDAKPRRPKRQRPVIDF 99
           S    G++ G   E E+  P +             SA  + +    KPRRPKR++ V + 
Sbjct: 395 SYANAGLIPGTWVEMEESCP-ETDSDSNDTDEDPSSASNDEKAKKKKPRRPKRRKIVSEL 453

Query: 100 SVKI 103
           +  I
Sbjct: 454 TQNI 457


>SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31)
          Length = 353

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 6/107 (5%)

Query: 35  ARTEESQRGGGILNGNTTEGEDGKPGKPXXXXXXXXXXTKSAGKEPREGDAKPRRPKRQR 94
           ++T    +  G +   T+ G + KP +              +GK+P EGDA+ + P +  
Sbjct: 209 SKTSGQGQSAGSVPSLTSTGSERKPEQQENQQESG-----KSGKQPTEGDAREQSPSQSG 263

Query: 95  PVIDFSVKISNISPNTRVRDLKQALSE-RGVKPQIMVWKGEGDSGVS 140
                S ++ +   NT       + S   GV  Q    + E  + VS
Sbjct: 264 SKQPNSEELQSTHQNTPQSSSSSSTSNISGVDQQKQATQQESQTSVS 310


>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
          Length = 2123

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 6/107 (5%)

Query: 35  ARTEESQRGGGILNGNTTEGEDGKPGKPXXXXXXXXXXTKSAGKEPREGDAKPRRPKRQR 94
           ++T    +  G +   T+ G + KP +              +GK+P EGDA+ + P +  
Sbjct: 487 SKTSGQGQSAGSVPSLTSTGSERKPEQQENQQESG-----KSGKQPTEGDAREQSPSQSG 541

Query: 95  PVIDFSVKISNISPNTRVRDLKQALSE-RGVKPQIMVWKGEGDSGVS 140
                S ++ +   NT       + S   GV  Q    + E  + VS
Sbjct: 542 SKQPNSEELQSTHQNTPQSSSSSSTSNISGVDQQKQATQQESQTSVS 588


>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1234

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 9/49 (18%)

Query: 13  EGGGYGCGGTHRAASEKGAATYARTEESQRGGGILNGNTTEGEDGKPGK 61
           E G  G  G H    E+G         SQ G GI  G   EG  G PG+
Sbjct: 117 ESGSRGLPGNHGVQGERG---------SQGGRGIKGGRGNEGSAGIPGR 156


>SB_1089| Best HMM Match : AbfB (HMM E-Value=0.034)
          Length = 472

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/44 (31%), Positives = 15/44 (34%)

Query: 14  GGGYGCGGTHRAASEKGAATYARTEESQRGGGILNGNTTEGEDG 57
           GGG   GG      + GA     T  S  GG    G    G  G
Sbjct: 136 GGGAAGGGGQEGGGQGGAQAGGSTSGSSSGGATSGGGGVSGSSG 179


>SB_47118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 3/121 (2%)

Query: 3   SYQSRSRLHAEGGGYGCGGTHRAASEKGAATYARTEESQRGGGILNGNTTEGEDGKPGKP 62
           S +S  R H    G  C GT    S+       + + S +     NG T   +D KP   
Sbjct: 2   SEKSSKRQHGGKRGENCAGTAGTPSKIKDDQKQKEQNSLKNDDKNNGKTE--QDEKPPNS 59

Query: 63  XXXXXXXXXXTKSAGKEPREGDAKPRRPKRQRPVIDFSVKISNISPNTRVRDLKQALSER 122
                      +    E R+ + + R  +  +  I+ + ++ N   +TR ++L  A   R
Sbjct: 60  VAEERQQTEEQQQLEDEKRKEEERQREIEEVQQAINEAQELVNTKISTREKNL-AASGHR 118

Query: 123 G 123
           G
Sbjct: 119 G 119


>SB_15078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 19  CGGTHRAASEKGAATYARTEESQRGGGILNGNTTEGEDGKPGKP 62
           C    R +  +  A  +R +E +RG   L G  T+G DG+PG P
Sbjct: 111 CKRGKRGSRGRTGAKGSRGKEGKRGKTGLPG--TDGRDGRPGVP 152


>SB_35452| Best HMM Match : UK (HMM E-Value=5.7)
          Length = 223

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/37 (37%), Positives = 22/37 (59%)

Query: 88  RRPKRQRPVIDFSVKISNISPNTRVRDLKQALSERGV 124
           RR KRQR   +FS  ++   PN+ VR   ++ S++ V
Sbjct: 34  RRSKRQRSQPNFSRDLNGAIPNSPVRQSTKSFSKQPV 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.308    0.129    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,456,738
Number of Sequences: 59808
Number of extensions: 265422
Number of successful extensions: 689
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 680
Number of HSP's gapped (non-prelim): 21
length of query: 199
length of database: 16,821,457
effective HSP length: 79
effective length of query: 120
effective length of database: 12,096,625
effective search space: 1451595000
effective search space used: 1451595000
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 58 (27.5 bits)